Your message dated Mon, 28 Mar 2022 13:22:23 +0000 with message-id <e1nypkb-0005lg...@fasolo.debian.org> and subject line Bug#1008368: fixed in pigx-rnaseq 0.0.19+ds-1 has caused the Debian Bug report #1008368, regarding pigx-rnaseq: FTBFS: configure: error: R package rmarkdown not found. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1008368: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1008368 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pigx-rnaseq Version: 0.0.19-2 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220326 ftbfs-bookworm Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > configure: Using /usr/bin/salmon as salmon executable. > checking for R... /usr/bin/R > checking for Rscript... /usr/bin/Rscript > checking for bamCoverage... /usr/bin/bamCoverage > checking R package rmarkdown ... no > configure: error: R package rmarkdown not found. > tail -v -n \+0 config.log The full build log is available from: http://qa-logs.debian.net/2022/03/26/pigx-rnaseq_0.0.19-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: pigx-rnaseq Source-Version: 0.0.19+ds-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of pigx-rnaseq, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1008...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated pigx-rnaseq package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 28 Mar 2022 14:06:22 +0200 Source: pigx-rnaseq Architecture: source Version: 0.0.19+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1008368 Changes: pigx-rnaseq (0.0.19+ds-1) unstable; urgency=medium . * Team upload. * Drop broken autoconf m4 files from upstream source and use autoconf-archive instead Closes: #1008368 * Drop files that are not included in upstream source from Files-Excluded * Drop transition for old debug package migration. Checksums-Sha1: 0ef53a7cf40ffda103354c5fcd5037ac3d2db732 2886 pigx-rnaseq_0.0.19+ds-1.dsc 2732c830aeb5a466079471ce9ceafcbd18e84e52 4419412 pigx-rnaseq_0.0.19+ds.orig.tar.xz a3387c2b06c137547af261211ef3c0556422192c 12484 pigx-rnaseq_0.0.19+ds-1.debian.tar.xz 17efbcdde79f3fcee4915caa20cca6e976acc1dc 24366 pigx-rnaseq_0.0.19+ds-1_amd64.buildinfo Checksums-Sha256: ed7e9947db164fabb0438c24ea56642a0c42649b311ccc40e184067cc3a39459 2886 pigx-rnaseq_0.0.19+ds-1.dsc 0200c0b6b565ecaf3a35e380f180dd2142e35d6b59d60e485abb31d2b67eec0f 4419412 pigx-rnaseq_0.0.19+ds.orig.tar.xz cec9d1753dfb57057b3d3eaf9ed7f438d3f9ee16b1a42b48823de76b5a708e5d 12484 pigx-rnaseq_0.0.19+ds-1.debian.tar.xz 2f35ef2e92ccc5832aa34ddd12132cdf85b7a4a2e0f198903e391378a9784a8b 24366 pigx-rnaseq_0.0.19+ds-1_amd64.buildinfo Files: 1597bf05d6383ba223c8e47682823e90 2886 science optional pigx-rnaseq_0.0.19+ds-1.dsc 3ac09015abc002d23bb425ea9af871d5 4419412 science optional pigx-rnaseq_0.0.19+ds.orig.tar.xz d022c2760779c002d37d9283aa109aea 12484 science optional pigx-rnaseq_0.0.19+ds-1.debian.tar.xz 241840ca8194ef1a06ebbb45b847b31a 24366 science optional pigx-rnaseq_0.0.19+ds-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmJBr1ARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHeXQ//U/y8hTr6Y++d6G2Dt8T0QqUcU33M8y/w 9ez2wWuKl3rJCt0VHNVp2LZE2yzWnRn8QvJ5R1nvoSkRs6uTBZ5FD9UlVKfMf9zT LRsAlYNRI/BBkrhyb+NDEhFcN5n8nmIrs1fsnxHqSejXoD3Gj35twaauU5A+/n46 7j98w/k880Xx4aeK+EZLDLS7A0J8fBkxRUTKpbbS6AcyVQi9uyCpS+TsRbUtt/p4 FEAboa3psV7Esz087awTzVk27winQmgjH9jV5ij8916BNxKyjSVriLFa65ww4U7E S9qi8DrfXiHZzeoJSJvaoZDu9cL8CZDECVR65tPmdlNNYqqsULenlHuG8QPTL5eJ 5Lz3hLzsrO6ORt3qXYFVd47RvYWxdfXGM9/He1oEELAdfFztcw3YbjXCuFqPyE30 hcOoQNcnwOl1/UgVelKr9n1Y4pDLg6Lm52E24g8QC6/iD6wPKnyujLH13de5WJGe MQgEVekF15sFrW9xod953ec7idxO6NRS5ng3OrOIMu6EAPFhEoCZmZl7HTog7EHn DWE6/lTRSXC3Ox9eD4gHCdLSaoJEBwUgR9WtBwCT6GnIUeR+dHSp3bdadSx5Mzhe pKThNPET9EsJLcCIetDHV4535HZ2vq1jRqPt0jWTveQU7Upbe1MOUdJ2T60LJ4sJ 4NVmXib4/s4= =dvfu -----END PGP SIGNATURE-----
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