Your message dated Tue, 29 Mar 2022 21:49:08 +0000 with message-id <[email protected]> and subject line Bug#1008635: fixed in atropos 1.1.31+dfsg-2 has caused the Debian Bug report #1008635, regarding atropos: ImportError: cannot import name 'Iterable' from 'collections' (/usr/lib/python3.10/collections/__init__.py) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1008635: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1008635 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: atropos Version: 1.1.31+dfsg-1 Severity: serious Tags: ftbfs sid bookworm Justification: fails to build from source (but built successfully in the past) atropos FTBFS with python 3.10 E ImportError: cannot import name 'Iterable' from 'collections' (/usr/lib/python3.10/collections/__init__.py) _______ ERROR collecting .pybuild/cpython3_3.10/build/tests/test_trim.py _______ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tests/test_trim.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.10/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) tests/test_trim.py:2: in <module> from atropos.adapters import Adapter, ColorspaceAdapter, PREFIX, BACK atropos/adapters/__init__.py:13: in <module> from atropos import align atropos/align/__init__.py:7: in <module> from atropos.util import RandomMatchProbability, reverse_complement atropos/util/__init__.py:3: in <module> from collections import OrderedDict, Iterable, Sequence E ImportError: cannot import name 'Iterable' from 'collections' (/usr/lib/python3.10/collections/__init__.py) =============================== warnings summary =============================== tests/test_paired.py:612 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tests/test_paired.py:612: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @pytest.mark.timeout(10) -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ ERROR tests/test_adapters.py ERROR tests/test_align.py ERROR tests/test_colorspace.py ERROR tests/test_commands.py ERROR tests/test_filters.py ERROR tests/test_modifiers.py ERROR tests/test_multicore.py ERROR tests/test_qualtrim.py ERROR tests/test_seqio.py ERROR tests/test_trim.py !!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!! ======================== 1 warning, 10 errors in 1.05s ========================= E: pybuild pybuild:367: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; python3.10 -m pytest tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 "--before-test=ln -s /<<PKGBUILDDIR>>/tests/cut {build_dir}/tests && ln -s /<<PKGBUILDDIR>>/tests/data {build_dir}/tests" returned exit code 13 See https://buildd.debian.org/status/fetch.php?pkg=atropos&arch=amd64&ver=1.1.31%2Bdfsg-1%2Bb1&stamp=1648449686&raw=0 Cheers -- Sebastian Ramacher
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--- Begin Message ---Source: atropos Source-Version: 1.1.31+dfsg-2 Done: Étienne Mollier <[email protected]> We believe that the bug you reported is fixed in the latest version of atropos, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <[email protected]> (supplier of updated atropos package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 29 Mar 2022 23:21:04 +0200 Source: atropos Architecture: source Version: 1.1.31+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Étienne Mollier <[email protected]> Closes: 1008635 Changes: atropos (1.1.31+dfsg-2) unstable; urgency=medium . * Team upload. * Add python3.10.patch. (Closes: #1008635) * Cleanup d/patches/. Checksums-Sha1: d052c1af4ee21db7b59ebda24d9000a0209c3cce 2178 atropos_1.1.31+dfsg-2.dsc 06e84cd183707452e29b09e5f799c9b0741eade9 5960 atropos_1.1.31+dfsg-2.debian.tar.xz 0695d560f39e35b1fa358801ad6f91afede95bdc 8079 atropos_1.1.31+dfsg-2_amd64.buildinfo Checksums-Sha256: 039b00659c509bc8d0d32475f51ad223795d18b6b293c582c2c80accfb75be84 2178 atropos_1.1.31+dfsg-2.dsc 2c64ed7c28788e603c55b808e30e182a0a9f21689ca4608e86e9fc142268bbf4 5960 atropos_1.1.31+dfsg-2.debian.tar.xz 95e2f5a17f47f581c8cfbd1ea72afb12b6b7e3af204b47705adb927fe67d1fe6 8079 atropos_1.1.31+dfsg-2_amd64.buildinfo Files: f2db4e1e5f826529a02d8cb47fd0729f 2178 science optional atropos_1.1.31+dfsg-2.dsc 5cf1f0bac24f5d7686aaa2f57430df72 5960 science optional atropos_1.1.31+dfsg-2.debian.tar.xz 4ec6f490dfb9dc8c43ae52a03ca23dc8 8079 science optional atropos_1.1.31+dfsg-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmJDfE0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdppYA/8CFcb2WWMQbnshcCbzAyB8wa2EmaZ aM9KJJQr6imH/8CtBY+l6EKxiuD2bMoHoiW0eyPt6+2auVMwUjwzD2yyoqmo7Rqd WDtKBp5f4HrnfzbAJaY20NABsol+ESSjyY2iFndAcfS/FUR7wwSPE2HyMpnkVllE FlJXp54WKpaGZTz4xS9wBRdoT/PP+ErwnRhV97Ijtuk4JNqL3O6Q8jautXrkMv/3 NoesApgUjlHCVfopmd+PHmhFI3wGktROAFLrOf+/gv6TLnegiDnxj5jaFIMSW0UZ WEwH6r0B0YloMJBviB+6IStYInDPNEnwIMx/PGX8KkhmCOSEwY+WsNjemHKxo31s Xp5kbr+pt9Y3q7VNyYQCKB1Z762GMJd1ndPUKaz9pGy9LoVwMv9tOXML6NHrQ+E4 spH7VFsh1jPMsQK/Tk4zRZ53oaAZ1YS/ihazls+YqPdZdkQyTjXMtQ3ZhqtfnR3i 4Ipg1gbvbbiKOgNOaqdK3nd6IDNIQe3m5yocw6tHZkAWP/geCzh4dO7kr8GELtje yoYFgtamySkbn3mbPaJxSnUZaJ239vZgzv/FpSGStJTsBLewLob4GCDrVF9x0OPg /qoGKAwSJwATqcY6gw46+QiTcD7zrQLcSNx88YZ+Izfs9LnspGUJyCIsL+kt74da fIe2XwmQsvoBAjU= =Cakf -----END PGP SIGNATURE-----
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