Source: octave-brain2mesh Version: 0.7.9-2 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: [email protected] Usertags: ftbfs-20220624 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir inst > cp *.m inst > rm -rf inst/polyline*.m inst/slice*.m inst/closestnode.m inst/layersurf.m > cp LICENSE.txt COPYING > cat > DESCRIPTION << EOF > Name: brain2mesh > Version: 0.7.9 > Date: 2020-27-06 > Title: Fully automated high-quality brain tetrahedral mesh generation toolbox > Author: Qianqian Fang <[email protected]> > Maintainer: Qianqian Fang <[email protected]> > Description: The Brain2Mesh toolbox provides a streamlined matlab function > to convert > _a segmented brain volumes and surfaces into a high-quality multi-layered > _tetrahedral brain/full head mesh. Typical inputs include segmentation > _outputs from SPM, FreeSurfer, FSL etc. This tool does not handle the > _segmentation of MRI scans, but examples of how commonly encountered > _segmented datasets can be used to create meshes can be found in the > _package named brain2mesh-demos. > URL: http://mcx.space/brain2mesh > Depends: image, iso2mesh, jsonlab, jnifti, zmat > EOF > cat > INDEX << EOF > brain2mesh >> Brain2Mesh > _brain2mesh > _brain1020 > _label2tpm > _tpm2label > _intriangulation > EOF > cat > NEWS << EOF > = Brain2Mesh - A one-liner brain mesh generator = > > Brain2Mesh ChangeLog (key features marked by *): > > == Brain2Mesh 0.7.9 (codename: Pons -beta), FangQ <q.fang (at) neu.edu> == > > 2020-03-27 [1e20cf2] add surfonly option,allow per layer threshold and > smooth,fix smoothing #12 > 2020-03-02 [fbdb166] add polylinesimplify to remove sharp turns, validated > with nfri toolbox by Pepe Dan's lab > 2020-03-01 [e8bed87] now interactive clicker can handle partial initpoints > 2020-03-01 [98a42a7] first fully tested brain1020, bisect cm/sm by cz > iteratively, add demo > 2020-02-28 [eb9e57e] change license from GPL v2 to GPL v3 > 2020-02-28 [3e88bd8] allow missing seg components > 2020-02-22 [44daa41] post the final citation info > 2020-02-22 [f359abf] simplify demo scripts, test smoothing option > 2020-02-22 [8fd8d6d] normalize tpm, add cfg.imfill, update paper ref, enable > distbound opt > 2020-02-20 [3646ac6] re-enable surface smoothing option, add citation info > 2019-08-21 [eb9ebb7] convert .nii.gz based segmentation to JNIfTI format > .jnii files for portability > 2018-10-14 [2facd27] rewrite the element label mapping step > 2018-10-13 [6ae063d] add dependency check, replace surf2mesh to s2m > 2018-10-13 [5ee7ddc] major code reduction and restructure, replace max_filter > with imdilate > EOF > sed -i 's/^_/ /g' INDEX DESCRIPTION > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_build -O--buildsystem=octave > dh_auto_test -O--buildsystem=octave > create-stamp debian/debhelper-build-stamp > dh_testroot -O--buildsystem=octave > dh_prep -O--buildsystem=octave > dh_installdirs -O--buildsystem=octave > dh_auto_install -O--buildsystem=octave > octave --no-gui --no-history --silent --no-init-file --no-window-system > /usr/share/dh-octave/install-pkg.m > /<<PKGBUILDDIR>>/debian/tmp/usr/share/octave/packages > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/octave/packages > warning: creating installation directory > /<<PKGBUILDDIR>>/debian/tmp/usr/share/octave/packages > warning: called from > install at line 36 column 5 > pkg at line 603 column 9 > /usr/share/dh-octave/install-pkg.m at line 38 column 1 > > For information about changes from previous versions of the brain2mesh > package, run 'news brain2mesh'. > dh_octave_check -O--buildsystem=octave > Checking package... > Checking m files ... > Checking C++ files ... > Summary: 0 tests, 0 passed, 0 known failures, 0 skipped > dh_install -O--buildsystem=octave > dh_installdocs -O--buildsystem=octave > dh_installchangelogs -O--buildsystem=octave > dh_octave_changelogs -O--buildsystem=octave > dh_installexamples -O--buildsystem=octave > dh_octave_examples -O--buildsystem=octave > dh_octave_examples: warning: skipping link from > usr/share/doc/brain2mesh-demos/examples to self > dh_installsystemduser -O--buildsystem=octave > dh_perl -O--buildsystem=octave > dh_link -O--buildsystem=octave > dh_strip_nondeterminism -O--buildsystem=octave > dh_compress -O--buildsystem=octave > dh_fixperms -O--buildsystem=octave > dh_missing -O--buildsystem=octave > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/brain1020.m > exists in debian/tmp but is not installed to anywhere (related file: > "inst/brain1020.m") > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/brain2mesh.m > exists in debian/tmp but is not installed to anywhere (related file: > "inst/brain2mesh.m") > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/doc-cache > exists in debian/tmp but is not installed to anywhere > dh_missing: warning: > usr/share/octave/packages/brain2mesh-0.7.9/intriangulation.m exists in > debian/tmp but is not installed to anywhere (related file: > "inst/intriangulation.m") > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/label2tpm.m > exists in debian/tmp but is not installed to anywhere (related file: > "inst/label2tpm.m") > dh_missing: warning: > usr/share/octave/packages/brain2mesh-0.7.9/packinfo/DESCRIPTION exists in > debian/tmp but is not installed to anywhere > dh_missing: warning: > usr/share/octave/packages/brain2mesh-0.7.9/packinfo/INDEX exists in > debian/tmp but is not installed to anywhere > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/packinfo/NEWS > exists in debian/tmp but is not installed to anywhere (related file: "NEWS") > dh_missing: warning: usr/share/octave/packages/brain2mesh-0.7.9/tpm2label.m > exists in debian/tmp but is not installed to anywhere (related file: > "inst/tpm2label.m") > dh_missing: error: missing files, aborting > > While detecting missing files, dh_missing noted some files with a > similar name to those > that were missing. This error /might/ be resolved by replacing > references to the > missing files with the similarly named ones that dh_missing found - > assuming the content > is identical. > > As an example, you might want to replace: > * inst/brain1020.m > with: > * usr/share/octave/packages/brain2mesh-0.7.9/brain1020.m > in a file in debian/ or as argument to one of the dh_* tools called > from debian/rules. > (Note it is possible the paths are not used verbatim but instead > directories > containing or globs matching them are used instead) > > Alternatively, add the missing file to debian/not-installed if it > cannot and should not > be used. > > The following debhelper tools have reported what they installed (with > files per package) > * dh_install: brain2mesh-demos (0), matlab-brain2mesh (5), > octave-brain2mesh (0) > * dh_installdocs: brain2mesh-demos (0), matlab-brain2mesh (0), > octave-brain2mesh (3) > * dh_installexamples: brain2mesh-demos (4), matlab-brain2mesh (0), > octave-brain2mesh (0) > If the missing files are installed by another tool, please file a bug > against it. > When filing the report, if the tool is not part of debhelper itself, > please reference the > "Logging helpers and dh_missing" section from the "PROGRAMMING" guide > for debhelper (10.6.3+). > (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) > Be sure to test with dpkg-buildpackage -A/-B as the results may vary > when only a subset is built > If the omission is intentional or no other helper can take care of this > consider adding the > paths to debian/not-installed. > make: *** [debian/rules:5: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2022/06/24/octave-brain2mesh_0.7.9-2_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220624;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220624&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
