Source: r-cran-tmb Version: 1.9.1-2 Severity: serious X-Debbugs-CC: rmat...@packages.debian.org Tags: sid bookworm User: debian...@lists.debian.org Usertags: needs-update Control: affects -1 src:rmatrix
Dear maintainer(s),With a recent upload of rmatrix the autopkgtest of r-cran-tmb fails in testing when that autopkgtest is run with the binary packages of rmatrix from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
rmatrix from testing 1.5-3-1
r-cran-tmb from testing 1.9.1-2
all others from testing from testing
I copied some of the output at the bottom of this report. This looks
like a run time check that's not expressed in package relations. If it
were, it would show up in the auto-trackers. I would prefer if the check
can be dropped, but if that's not smart/possible/... than the dependency
should be tightened.
Currently this regression is blocking the migration of rmatrix to testing [1]. Of course, rmatrix shouldn't just break your autopkgtest (or even worse, your package), but it seems to me that the change in rmatrix was intended and your package needs to update to the new situation.
If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from rmatrix should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=rmatrix https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-tmb/29135396/log.gz R version 4.2.2 Patched (2022-11-10 r83330) -- "Innocent and Trusting" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
options("warn" = 2); library(TMB)
Error: package or namespace load failed for ‘TMB’: .onLoad failed in loadNamespace() for 'TMB', details: call: checkMatrixPackageVersion() error: (converted from warning) Package version inconsistency detected. TMB was built with Matrix version 1.5.1 Current Matrix version is 1.5.3Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Execution halted autopkgtest [10:20:00]: test r-cran-matrix_compatibility
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