Your message dated Wed, 01 Feb 2023 13:08:25 +0000
with message-id <[email protected]>
and subject line Bug#1030182: fixed in unifrac 1.2-3
has caused the Debian Bug report #1030182,
regarding unifrac FTBFS with scipy 1.10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1030182: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1030182
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: unifrac
Version: 1.2-2
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
https://buildd.debian.org/status/fetch.php?pkg=unifrac&arch=amd64&ver=1.2-2%2Bb1&stamp=1675069851&raw=0
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_unifrac/build;
python3.11 -m unittest discover -v
unifrac (unittest.loader._FailedTest.unifrac) ... ERROR
======================================================================
ERROR: unifrac (unittest.loader._FailedTest.unifrac)
----------------------------------------------------------------------
ImportError: Failed to import test module: unifrac
Traceback (most recent call last):
File "/usr/lib/python3.11/unittest/loader.py", line 440, in _find_test_path
package = self._get_module_from_name(name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/unittest/loader.py", line 350, in
_get_module_from_name
__import__(name)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_unifrac/build/unifrac/__init__.py",
line 11, in <module>
from unifrac._methods import (unweighted,
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_unifrac/build/unifrac/_methods.py",
line 15, in <module>
import skbio
File "/usr/lib/python3/dist-packages/skbio/__init__.py", line 11, in <module>
import skbio.io # noqa
^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/skbio/io/__init__.py", line 248, in
<module>
import_module('skbio.io.format.lsmat')
File "/usr/lib/python3.11/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/skbio/io/format/lsmat.py", line 77, in
<module>
from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
File "/usr/lib/python3/dist-packages/skbio/stats/distance/__init__.py", line
197, in <module>
from ._mantel import mantel, pwmantel
File "/usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py", line
16, in <module>
from scipy.stats import PearsonRConstantInputWarning
ImportError: cannot import name 'PearsonRConstantInputWarning' from
'scipy.stats' (/usr/lib/python3/dist-packages/scipy/stats/__init__.py)
----------------------------------------------------------------------
Ran 1 test in 0.001s
FAILED (errors=1)
E: pybuild pybuild:388: test: plugin distutils failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_unifrac/build; python3.11 -m unittest
discover -v
dh_auto_test: error: pybuild --test -i python{version} -p 3.11 returned exit
code 13
make: *** [debian/rules:8: binary-arch] Error 25
Cheers
--
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: unifrac
Source-Version: 1.2-3
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
unifrac, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated unifrac package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 01 Feb 2023 13:47:44 +0100
Source: unifrac
Architecture: source
Version: 1.2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1030182
Changes:
unifrac (1.2-3) unstable; urgency=medium
.
* Versioned Build-Depends: python3-skbio (>= 0.5.8-3~)
Closes: #1030182
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