Source: relion-cuda Version: 3.1.3-2 Severity: serious Tags: ftbfs sid trixie Justification: fails to build from source
Hi, relion-cuda FTBFS in the combination of CUDA 11.8 and CUB 2.0.1: ... nvcc warning : The 'compute_35', 'compute_37', 'sm_35', and 'sm_37' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning). /usr/include/cub/util_debug.cuh(184): error: function "cub::Debug" has already been defined /usr/include/cub/util_debug.cuh(184): error: function "cub::Debug" has already been defined /usr/include/cub/util_debug.cuh(184): error: function "cub::Debug" has already been defined Generated /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_backprojector.cu.o successfully. Generated /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector.cu.o successfully. /usr/include/cub/util_debug.cuh(184): error: function "cub::Debug" has already been defined 1 error detected in the compilation of "/build/relion-cuda-3.1.3/src/acc/cuda/cuda_projector_plan.cu". -- Removing /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector_plan.cu.o /usr/bin/cmake -E rm -f /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector_plan.cu.o CMake Error at relion_gpu_util_generated_cuda_projector_plan.cu.o.Release.cmake:280 (message): Error generating file /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector_plan.cu.o make[4]: *** [src/apps/CMakeFiles/relion_gpu_util.dir/build.make:129: src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/relion_gpu_util_generated_cuda_projector_plan.cu.o] Error 1 make[4]: *** Waiting for unfinished jobs.... Generated /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_benchmark_utils.cu.o successfully. 1 error detected in the compilation of "/build/relion-cuda-3.1.3/src/acc/cuda/cuda_autopicker.cu". 1 error detected in the compilation of "/build/relion-cuda-3.1.3/src/acc/cuda/cuda_helper_functions.cu". -- Removing /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_autopicker.cu.o -- Removing /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_helper_functions.cu.o /usr/bin/cmake -E rm -f /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_autopicker.cu.o /usr/bin/cmake -E rm -f /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_helper_functions.cu.o CMake Error at relion_gpu_util_generated_cuda_autopicker.cu.o.Release.cmake:280 (message): Error generating file /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_autopicker.cu.o make[4]: *** [src/apps/CMakeFiles/relion_gpu_util.dir/build.make:80: src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/relion_gpu_util_generated_cuda_autopicker.cu.o] Error 1 CMake Error at relion_gpu_util_generated_cuda_helper_functions.cu.o.Release.cmake:280 (message): Error generating file /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_helper_functions.cu.o make[4]: *** [src/apps/CMakeFiles/relion_gpu_util.dir/build.make:101: src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/relion_gpu_util_generated_cuda_helper_functions.cu.o] Error 1 1 error detected in the compilation of "/build/relion-cuda-3.1.3/src/acc/cuda/cuda_ml_optimiser.cu". -- Removing /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_ml_optimiser.cu.o /usr/bin/cmake -E rm -f /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_ml_optimiser.cu.o CMake Error at relion_gpu_util_generated_cuda_ml_optimiser.cu.o.Release.cmake:280 (message): Error generating file /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_ml_optimiser.cu.o make[4]: *** [src/apps/CMakeFiles/relion_gpu_util.dir/build.make:115: src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/relion_gpu_util_generated_cuda_ml_optimiser.cu.o] Error 1 Generated /build/relion-cuda-3.1.3/build/src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/cuda_kernels/./relion_gpu_util_generated_helper.cu.o successfully. make[4]: Leaving directory '/build/relion-cuda-3.1.3/build' make[3]: *** [CMakeFiles/Makefile2:300: src/apps/CMakeFiles/relion_gpu_util.dir/all] Error 2 make[3]: Leaving directory '/build/relion-cuda-3.1.3/build' make[2]: *** [Makefile:139: all] Error 2 make[2]: Leaving directory '/build/relion-cuda-3.1.3/build' make[1]: *** [debian/rules:41: override_dh_auto_build] Error 2 make[1]: Leaving directory '/build/relion-cuda-3.1.3' make: *** [debian/rules:33: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 Andreas
relion-cuda.sid.build.gz
Description: application/gzip
