On Sun, Dec 10, 2023 at 1:28 AM Torrance, Douglas <dtorra...@piedmont.edu> wrote: > > Control: reassign -1 src:nauty 2.8.8+ds-1 > > On Sun 10 Dec 2023 12:08:31 AM +08, Bo YU <tsu.y...@gmail.com> wrote: > > [[PGP Signed Part:Undecided]] > > On Mon, Dec 04, 2023 at 02:22:43PM +0100, Matthias Klose wrote: > >>Package: src:pynormaliz > >>Version: 2.18+ds-1 > >>Severity: serious > >>Tags: sid trixie > >>User: debian-pyt...@lists.debian.org > >>Usertags: python3.12 > >> > >>pynormaliz ftbfs with Python 3.12: > >> > >> > >>[...] > >>dh execute_after_dh_auto_build --buildsystem=pybuild > >>make[1]: Leaving directory '/<<PKGBUILDDIR>>' > >> dh_auto_test -a -O--buildsystem=pybuild > >> I: pybuild base:310: cd > >> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; > >> PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build python3.12 > >>tests/runtests.py > >>Error: nauty.c version mismatch > >> E: pybuild pybuild:395: test: plugin distutils failed with: exit > >> code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; > >>PYTHONPATH={build_dir} {interpreter} tests/runtests.py > >> I: pybuild base:310: cd > >> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; > >> PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build python3.11 > >>tests/runtests.py > >>Error: nauty.c version mismatch > >> E: pybuild pybuild:395: test: plugin distutils failed with: exit > >> code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; > >>PYTHONPATH={build_dir} {interpreter} tests/runtests.py > >> dh_auto_test: error: pybuild --test -i python{version} -p "3.12 > >> 3.11" returned exit code 13 > >>make: *** [debian/rules:9: binary-arch] Error 25 > >> > > > > I have spent some time looking at this and I'm more inclined to think > > about that this issue has nothing to do with python3.12. > > > > The error from (lib)nauty, unfortunately I did not find the root cause. > > The error prototype is defined: > > https://salsa.debian.org/science-team/nauty/-/blame/master/nauty.c?page=2#L1175 > > > > pynormaliz use libnormaliz that defined some header files in > > /usr/include/libnormaliz/ which has relative with nauty. > > > > In fact even on python3.12 the pynormaliz package can be built with > > nauty 2.8.6+ds-2. Now the failed version is on nauty 2.8.8+ds-1. So if > > you look at the update for nauty and then have a better understand: > > https://tracker.debian.org/pkg/nauty > > > > So I suspected the root cause is that upgrading of nauty. If someone > > help me to understand the specially call chain or debug method I'm > > appreciate it. > > I think this is really a nauty bug, and so it's showing up in normaliz and > consequently pynormaliz. Here it is in normaliz, for example: > > $ cat cube_3.in > amb_space 3 > constraints 6 symbolic > x[1] >= 0; > x[2] >= 0; > x[3] >= 0; > x[1] <= 1; > x[2] <= 1; > x[3] <= 1; > EuclideanAutomorphisms > $ normaliz cube_3.in > Error: nauty.c version mismatch > > I think the underlying problem is that nauty forces all of its reverse > dependencies to be built against the latest version with the nauty_check() > function. But currently, we're not bumping the SONAME version when this > happens to trigger a transition. Maybe we should do that.
Yeah, I agree with that. I wondered why we do not have a transition for nauty.:) At first I thought about libnormaliz did not rebuild based on nauty 2.8.8 then I rebuilt a new verision based on 2.8.8, but the error still existed, so I have confusion more. Bo > > Doug