Your message dated Wed, 20 Dec 2023 16:19:59 +0000
with message-id <e1rfzid-002wr9...@fasolo.debian.org>
and subject line Bug#1059139: fixed in shasta 0.11.1-4
has caused the Debian Bug report #1059139,
regarding shasta: FTBFS: error: ‘reverse’ is not a member of ‘std’
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1059139: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059139
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: shasta
Version: 0.11.1-3
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramac...@debian.org
https://buildd.debian.org/status/fetch.php?pkg=shasta&arch=amd64&ver=0.11.1-3%2Bb1&stamp=1702936288&raw=0
[ 3%] Building CXX object
dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dynamicLibrary && /usr/bin/c++
-DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY
-DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.11.1 -DNDEBUG -DSHASTA_PYTHON_API
-I/<<PKGBUILDDIR>>/dynamicLibrary/../src -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion
-Wno-unused-result -Wno-trigraphs -g0 -O3 -mcx16 -I/usr/include/python3.11
-I/usr/lib/python3/dist-packages/pybind11/include -MD -MT
dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o
-MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o.d -o
CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o -c
/<<PKGBUILDDIR>>/src/AssembledSegment.cpp
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dynamicLibrary && /usr/bin/c++
-DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY
-DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.11.1 -DNDEBUG -DSHASTA_PYTHON_API
-I/<<PKGBUILDDIR>>/dynamicLibrary/../src -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++20 -Wall -Wconversion
-Wno-unused-result -Wno-trigraphs -g0 -O3 -mcx16 -I/usr/include/python3.11
-I/usr/lib/python3/dist-packages/pybind11/include -MD -MT
dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o
-MF CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o.d -o
CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o -c
/<<PKGBUILDDIR>>/src/AlignmentGraph.cpp
In file included from /<<PKGBUILDDIR>>/src/AlignmentGraph.hpp:23,
from /<<PKGBUILDDIR>>/src/AlignmentGraph.cpp:3:
/<<PKGBUILDDIR>>/src/CompactUndirectedGraph.hpp: In member function ‘void
shasta::CompactUndirectedGraph<Vertex, Edge>::doneAddingEdges()’:
/<<PKGBUILDDIR>>/src/CompactUndirectedGraph.hpp:573:14: error: ‘reverse’ is not
a member of ‘std’
573 | std::reverse(
| ^~~~~~~
[ 3%] Building CXX object
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/staticLibrary && /usr/bin/c++
-DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY
-DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.11.1 -DNDEBUG
-I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -Wall -Wconversion
-Wno-unused-result -Wno-trigraphs -g0 -O3 -mcx16 -MD -MT
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o
-MF CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o.d -o
CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o -c
/<<PKGBUILDDIR>>/src/AlignmentGraph.cpp
[ 4%] Building CXX object
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/staticLibrary && /usr/bin/c++
-DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY
-DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.11.1 -DNDEBUG
-I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -Wall -Wconversion
-Wno-unused-result -Wno-trigraphs -g0 -O3 -mcx16 -MD -MT
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o
-MF CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o.d -o
CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o -c
/<<PKGBUILDDIR>>/src/AssembledSegment.cpp
In file included from /<<PKGBUILDDIR>>/src/AlignmentGraph.hpp:25:
/<<PKGBUILDDIR>>/src/shortestPath.hpp: In function ‘void
shasta::findShortestPath(Graph&, typename Graph::vertex_descriptor, typename
Graph::vertex_descriptor, std::vector<typename Graph::vertex_descriptor>&,
FindShortestPathQueue<Graph>&)’:
/<<PKGBUILDDIR>>/src/shortestPath.hpp:131:18: error: ‘reverse’ is not a member
of ‘std’
131 | std::reverse(path.begin(), path.end());
| ^~~~~~~
make[4]: ***
[dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make:107:
dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o]
Error 1
make[4]: *** Waiting for unfinished jobs....
[ 4%] Building CXX object
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/staticLibrary && /usr/bin/c++
-DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY
-DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.11.1 -DNDEBUG
-I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -Wall -Wconversion
-Wno-unused-result -Wno-trigraphs -g0 -O3 -mcx16 -MD -MT
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o -MF
CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o.d -o
CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o -c
/<<PKGBUILDDIR>>/src/Assembler.cpp
In file included from /<<PKGBUILDDIR>>/src/AlignmentGraph.hpp:23,
from /<<PKGBUILDDIR>>/src/AlignmentGraph.cpp:3:
/<<PKGBUILDDIR>>/src/CompactUndirectedGraph.hpp: In member function ‘void
shasta::CompactUndirectedGraph<Vertex, Edge>::doneAddingEdges()’:
/<<PKGBUILDDIR>>/src/CompactUndirectedGraph.hpp:573:14: error: ‘reverse’ is not
a member of ‘std’
573 | std::reverse(
| ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/AlignmentGraph.hpp:25:
/<<PKGBUILDDIR>>/src/shortestPath.hpp: In function ‘void
shasta::findShortestPath(Graph&, typename Graph::vertex_descriptor, typename
Graph::vertex_descriptor, std::vector<typename Graph::vertex_descriptor>&,
FindShortestPathQueue<Graph>&)’:
/<<PKGBUILDDIR>>/src/shortestPath.hpp:131:18: error: ‘reverse’ is not a member
of ‘std’
131 | std::reverse(path.begin(), path.end());
| ^~~~~~~
make[4]: *** [staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make:107:
staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o]
Error 1
Cheers
--
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: shasta
Source-Version: 0.11.1-4
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
shasta, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1059...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated shasta package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 20 Dec 2023 16:50:12 +0100
Source: shasta
Architecture: source
Version: 0.11.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1059139
Changes:
shasta (0.11.1-4) unstable; urgency=medium
.
* gcc-13-bis.patch: new: fix ftbfs with gcc 13.2.0. (Closes: #1059139)
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