Your message dated Sat, 30 Dec 2023 11:07:50 +0000 with message-id <e1rjxc2-00azde...@fasolo.debian.org> and subject line Bug#1054792: fixed in lammps 20231121+dfsg-1 has caused the Debian Bug report #1054792, regarding lammps: FTBFS: dh_install: error: missing files, aborting to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1054792: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054792 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: lammps Version: 20220106.git7586adbb6a+ds1-2 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20231027 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/debian/build' > make[2]: Nothing to be done for 'preinstall'. > make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' > Install the project... > /usr/bin/cmake -P cmake_install.cmake > -- Install configuration: "None" > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/lmp > -- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/lmp" to "" > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/angle.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/atom.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/bond.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/citeme.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/comm.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/compute.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/dihedral.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/domain.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/error.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/fix.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/force.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/group.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/improper.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/input.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/info.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/kspace.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/lammps.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/lattice.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/library.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/lmppython.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/lmptype.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/memory.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/modify.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/neighbor.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/neigh_list.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/output.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/pair.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/pointers.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/region.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/timer.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/universe.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/update.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/utils.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/lammps/variable.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/liblammps.so.0 > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/liblammps.so.0" to "" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/liblammps.so > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/liblammps.pc > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/LAMMPS/LAMMPS_Targets.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/LAMMPS/LAMMPS_Targets-none.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/LAMMPS/LAMMPSConfig.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/LAMMPS/LAMMPSConfigVersion.cmake > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/lmp.1 > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/etc/profile.d/lammps.sh > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/etc/profile.d/lammps.csh > /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: > SetuptoolsDeprecationWarning: setup.py install is deprecated. > !! > > > ******************************************************************************** > Please avoid running ``setup.py`` directly. > Instead, use pypa/build, pypa/installer or other > standards-based tools. > > See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html > for details. > > ******************************************************************************** > > !! > self.initialize_options() > make[1]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' > dh_install -O--with-sphinxdoc -O--sourcedirectory=cmake > -O--builddirectory=/<<BUILDDIR>>/lammps-20220106.git7586adbb6a\+ds1/debian/build > dh_install: warning: Cannot find (any matches for) "usr/lib/python*" (tried > in ., debian/tmp) > > dh_install: warning: python3-lammps missing files: usr/lib/python* > dh_install: error: missing files, aborting > make: *** [debian/rules:10: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2023/10/27/lammps_20220106.git7586adbb6a+ds1-2_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231027;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231027&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: lammps Source-Version: 20231121+dfsg-1 Done: Drew Parsons <dpars...@debian.org> We believe that the bug you reported is fixed in the latest version of lammps, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1054...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated lammps package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 30 Dec 2023 10:45:36 +0100 Source: lammps Architecture: source Version: 20231121+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Closes: 988849 1048351 1049827 1050795 1054792 Changes: lammps (20231121+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream Feature Release 21 Nov 2023. - html docs provides in upstream tarball, no need to rebuild * create debian/watch monitoring the list of releases in machine-readable format at https://download.lammps.org/tars/releases/ (linked as "older versions" from https://www.lammps.org/download.html) * drop debian patch 10_enable_spglib.patch: spglib support is now managed by cmake * update debian patch 20_set_potentials_path.patch to keep reading env variable LAMMPS_POTENTIALS as used in upstream code for custom potential data sets. Use the default debian location /usr/share/lammps/potentials if LAMMPS_POTENTIALS is not defined. * use pybuild to build python module after library. Closes: #1054792. - Build-Depends: pybuild-plugin-pyproject - test using example demo.py (build time and debian/tests runtime) - drop debian/python3-lammps.install * install benchmarks in lammps-examples (/usr/share/lammps/bench) - update debian patch do-not-install-potentials.patch to keep cmake from installing bench files in order to enable arch-indep builds (dh_install installs them from the source dir) * update debian/copyright - src/USER* dirs renamed - lib/message/cslib no longer used * remove generated python files. Closes: #1048351. * update docs in lammps-doc - rebuild HTML docs using sphinx. Closes: #988849. - dh --with sphinxdoc and Build-Depends: libjs-sphinxdoc - neverthless skip dh_sphinxdoc since sphinx and dh_sphinx are broken for lammps docs. See Bug#1059621 - Build-Depends-Indep: python3-venc not virtualvenv, python3-sphinxcontrib.jquery - move existing upstream html to html.org. Closes: #1049827. - update debian patch 30_build_docs.patch - skip sphinxfortran (not available for debian) - use local mathjax. Build-Depends: libjs-mathjax (config=TeX-AMS-MML_HTMLorMML not MML_CHTML) - provide Manual.pdf in lammps-doc - register html and PDF docs with doc-base - override lintian warning source-is-missing [doc/html/*.html] Source is in doc/src. - override dh_compress to not compress pdf files * update build config options: use PKG_* instead of PKG_USER_* Activate DIELECTRIC. Closes: #1050795. * Build-Depends: libpnetcdf-dev (as well as libnetcdf-dev) Lammps supports parallel NETCDF, though not parallel HDF5 (H5MD) Checksums-Sha1: 9bdec7df758db1ba64813563a28f48eb5a1f7948 3046 lammps_20231121+dfsg-1.dsc cea522e4f29365da79450d6cb6331141e1261f79 150251728 lammps_20231121+dfsg.orig.tar.xz fcc728327af78c00b85382bd3d695aa60ed59b81 16588 lammps_20231121+dfsg-1.debian.tar.xz Checksums-Sha256: 39bacd644f4926e012fd7a9db655e7ef35a6f4df66dce75b91ca9c376161540d 3046 lammps_20231121+dfsg-1.dsc e0c3b1c043f34ff06c51af2f165fa9bbdb8017d0bb71d4a52d0b29d132d46e8d 150251728 lammps_20231121+dfsg.orig.tar.xz 31dc46a03f77b02486569daed525a936e901573f3ee10eca52626ce96786d040 16588 lammps_20231121+dfsg-1.debian.tar.xz Files: 3a889b9c71e6aaef861e4a976e96401c 3046 science optional lammps_20231121+dfsg-1.dsc ba9bcff793120fb4e85f522da29c062e 150251728 science optional lammps_20231121+dfsg.orig.tar.xz ce7634f1a5f94bfd04acbf8dc055d65d 16588 science optional lammps_20231121+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmWP8pcACgkQVz7x5L1a Afo5KA/8CFRjbihhbYaI/jCRP1vCafUr00kQf/nh8Ov6NR3zvJfbvHYFLybppyku 7uPD7Ppm5TjxeJr+l//Tex4BrtvKA9WlSuP/UoGZrgAdnAMIyZQdAq+amrRoaM8l MgHj7szN6F9HSd5ZwbrpGuFbG35Q7ZbxwFnhs2S1kTeLLfheKYV59AYyJ0IJRnzo rWCmpJbYrjeOIL0GYWpJGbxhKX3uiUKs2NqqIUtQas8XwKDOBXkxkbaKfvGgkbe/ mdTeG+XkS7EHewj64pcJHDaNFqzPRmbAI7iFxi6rQnKauuC8xRVuWNygYWDppyMK YgrzIlSzOsSvIhZFfNT/72+aaGvsqbsLRg1rnfly9Zibljr788OU31hcpoN/j5jE MacIuv0RHMfitgTTLi5mCcyp5UGDWXnWKiP0kcrWhv/ZwUm60VyUp11gGj0bZpz5 8cM/5Zd4//FfkathydWQVJ2BqQUfTVZO9f0DwppTnS8s2BeKg7+65ogIMs1eZ25R qLbIJJiYZfnNmavsnvyeAmxZ2k+f92lGKz+iDXLLxlXGiuPlURJao/THtBk94grE OwxZXiqAWHNFRi0pPGJgG8EDPHHxVE+gIppLA4EveM5WWK3+kM1jz6fIXU5gjMlu JOPRY8hTJ5Ay+xmhMZ36gBQ+vrrpes4iVL6bLcNWjSWaTc1yq14= =4xIa -----END PGP SIGNATURE-----
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