Your message dated Tue, 16 Jan 2024 09:05:14 +0000
with message-id <[email protected]>
and subject line Bug#1042704: fixed in qutip 4.7.3-1
has caused the Debian Bug report #1042704,
regarding qutip: FTBFS with Sphinx 7.1, docutils 0.20: TypeError: not all
arguments converted during string formatting
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1042704: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042704
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: qutip
Version: 4.7.1-2
Severity: important
Tags: ftbfs
User: [email protected]
Usertags: sphinx7.1
Hi,
qutip fails to build with Sphinx 7.1 and docutils 0.20, both of which
are currently available in experimental.
Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
> sphinx-build -b html -d /<<PKGBUILDDIR>>/.pybuild/doc/doctrees .
> /<<PKGBUILDDIR>>/.pybuild/doc/html
> Running Sphinx v7.1.1
> /<<PKGBUILDDIR>>/doc/conf.py:84: UserWarning: The documentation source and
> imported qutip package are not from the same source folder. This may result
> in the documentation containing text from different sources. Documentation
> source: '/<<PKGBUILDDIR>>'. Qutip package source:
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build'.
> warnings.warn(
> WARNING: Invalid configuration value found: 'language = None'. Update your
> configuration to a valid language code. Falling back to 'en' (English).
> /usr/lib/python3/dist-packages/sphinx_gallery/sphinx_compatibility.py:71:
> RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is
> deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES
> for Sphinx API modifications.
> status_iterator = sphinx.util.status_iterator
> Calibrating OpenMP threshold...
> making output directory... done
> checking bibtex cache... out of date
> parsing bibtex file /<<PKGBUILDDIR>>/doc/guide/heom/heom.bib... parsed 3
> entries
> [autosummary] generating autosummary for: apidoc/apidoc.rst,
> apidoc/classes.rst, apidoc/functions.rst, biblio.rst, changelog.rst,
> contributors.rst, copyright.rst, development/contributing.rst,
> development/development.rst, development/docs.rst, ...,
> guide/heom/bosonic.rst, guide/heom/fermionic.rst, guide/heom/history.rst,
> guide/heom/intro.rst, guide/heom/references.rst, guide/qip/qip-basics.rst,
> guide/qip/qip-processor.rst, guide/qip/qip-simulator.rst, index.rst,
> installation.rst
> Failed to import qutip.fortran.mcsolve_f90.
> Possible hints:
> * AttributeError: module 'qutip' has no attribute 'fortran'
> * ModuleNotFoundError: No module named 'qutip.fortran'
> generating gallery...
> Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
> generating gallery for gallery/build...
> [2Kgenerating gallery for gallery/build/qip... [ 33%]
> plot_qip_intro_processor.py
> [2Kgenerating gallery for gallery/build/qip... [ 67%] plot_qip_relaxation.py
> [2Kgenerating gallery for gallery/build/qip... [100%]
> plot_qip_amplitude_noise.py
>
> computation time summary:
> - gallery/src/qip/plot_qip_intro_processor.py: 0.22 sec 0.0 MB
> - gallery/src/qip/plot_qip_relaxation.py: 0.13 sec 0.0 MB
> - gallery/src/qip/plot_qip_amplitude_noise.py: 0.12 sec 0.0 MB
> building [mo]: targets for 0 po files that are out of date
> writing output...
> building [html]: targets for 59 source files that are out of date
> updating environment: [new config] 64 added, 0 changed, 0 removed
> [2Kreading sources... [ 2%] apidoc/apidoc
> [2Kreading sources... [ 3%] apidoc/classes
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Parameters
> ----------- in
> Calculates a matrix element.
> ... in the docstring of matrix_element in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/qobj.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Parameters
> ----------- in
> Overlap between two state vectors or two operators.
> ... in the docstring of overlap in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/qobj.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> ---------- in
> Returns the lattice Hamiltonian for the instance of Lattice1d.
> ... in the docstring of Hamiltonian in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/lattice.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Parameters
> ------- in
> Returns a single particle wavefunction ket with the particle localized
> at a specified dof at a specified site of a specified cell.... in the
> docstring of basis in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/lattice.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> ---------- in
> Returns a single particle wavefunction ket with the particle localized
> at a specified dof at a specified site of a specified cell.... in the
> docstring of basis in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/lattice.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Parameters
> ------- in
> A function that returns an operator matrix that applies op to all the
> cells in the 1d lattice... in the docstring of distribute_operator in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/lattice.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> ---------- in
> A function that returns an operator matrix that applies op to all the
> cells in the 1d lattice... in the docstring of distribute_operator in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/lattice.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> ---------- in
> Return list of output states.
> ... in the docstring of get_final_states in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/qip/circuit.py.
> warn(msg)
> [2Kreading sources... [ 5%] apidoc/functions
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Examples
> --------- in
> Single-mode displacement operator.
> ... in the docstring of displace in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/operators.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Raises
> ------- in
> Creates a random Nx1 sparse ket vector.
> ... in the docstring of rand_ket in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/random_objects.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Raises
> ------- in
> Returns a Haar random pure state of dimension ``dim`` by
> applying a Haar random unitary to a fixed pure state.... in the docstring of
> rand_ket_haar in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/random_objects.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Operators for a three level system (qutrit)
> ... in the docstring of three_level_ops in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/three_level_atom.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Superoperator formed from pre-multiplication by operator A.
> ... in the docstring of spre in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/superoperator.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Superoperator formed from pre-multiplication by operator A and post-
> multiplication of operator B.... in the docstring of sprepost in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/superoperator.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Husimi-Q function of a given state vector or density matrix at phase-space
> points ``0.5 * g * (xvec + i*yvec)``.... in the docstring of qfunc in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/wigner.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns :
> ------- in
> Draw a histogram for the matrix M, with the given x and y labels and title.
> ... in the docstring of matrix_histogram in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/visualization.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Notes
> ------ in
> Plots a coloured Bloch sphere.
> ... in the docstring of plot_wigner_sphere in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/visualization.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> ---------- in
> Function to define initial state of the qubits.
> ... in the docstring of qubit_states in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/qip/qubits.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Parallel execution of a mapping of `values` to the function `task`. This
> is functionally equivalent to::... in the docstring of parallel_map in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/parallel.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Serial mapping function with the same call signature as parallel_map, for
> easy switching between serial and parallel execution. This... in the
> docstring of serial_map in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/parallel.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Call the function ``task`` for each value in ``values`` using a cluster
> of IPython engines. The function ``task`` should have the signature... in the
> docstring of parallel_map in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/ipynbtools.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Call the function ``tast`` for each value in ``task_vec`` using a cluster
> of IPython engines. The function ``task`` should have the signature... in the
> docstring of parfor in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/ipynbtools.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Print an HTML-formatted table with version numbers for QuTiP and its
> dependencies. Use it in a IPython notebook to show which versions of... in
> the docstring of version_table in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/ipynbtools.py.
> warn(msg)
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:460: UserWarning:
> potentially wrong underline length...
> Returns
> -------- in
> Simultaneous diagonalization of commuting Hermitian matrices.
> ... in the docstring of simdiag in
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/simdiag.py.
> warn(msg)
> [2Kreading sources... [ 6%] biblio
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_qutip/build/qutip/rhs_generate.py:docstring
> of qutip.rhs_generate.rhs_clear:7: CRITICAL: Unexpected section title or
> transition.
>
> ****
>
> Exception occurred:
> File "/usr/lib/python3/dist-packages/sphinx/ext/extlinks.py", line 103, in
> role
> title = caption % part
> ~~~~~~~~^~~~~~
> TypeError: not all arguments converted during string formatting
> The full traceback has been saved in /tmp/sphinx-err-slf0csvz.log, if you
> want to report the issue to the developers.
> Please also report this if it was a user error, so that a better error
> message can be provided next time.
> A bug report can be filed in the tracker at
> <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
> make[2]: *** [Makefile:45: html] Error 2
The full build log is available from:
http://qa-logs.debian.net/2023/07/30/exp/qutip_4.7.1-2_unstable_sphinx-exp.log
Please see [1] for Sphinx changelog and [2] for Docutils changelog.
Also see [3] for the list of deprecated/removed APIs in Sphinx and possible
alternatives to them.
Some notable changes in Sphinx 6 and Sphinx 7:
- Sphinx no longer includes jquery.js and underscore.js by default.
Please use python3-sphinxcontrib.jquery package if you are using a custom
template and it still needs jquery.
- The setup.py build_sphinx command was removed. Please instead call
sphinx-build or "python3 -m sphinx" directly.
- For packages using the extlinks extension, the caption should contain
exactly one "%s" placeholder (if caption is not None).
In case you have questions, please Cc [email protected] on reply.
[1]: https://www.sphinx-doc.org/en/master/changes.html
[2]:
https://repo.or.cz/docutils.git/blob/refs/tags/docutils-0.20.1:/RELEASE-NOTES.txt
[3]:
https://www.sphinx-doc.org/en/master/extdev/deprecated.html#dev-deprecated-apis
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=sphinx7.1;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=sphinx7.1&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
--- End Message ---
--- Begin Message ---
Source: qutip
Source-Version: 4.7.3-1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
qutip, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated qutip package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 16 Jan 2024 03:57:55 +0100
Source: qutip
Architecture: source
Version: 4.7.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1042704 1047093 1056517 1056880
Changes:
qutip (4.7.3-1) unstable; urgency=medium
.
* New upstream release
* Build-Depends: cython3-legacy. Closes: #1056880.
- versioned (>= 0.29.36) for Python 3.12. Closes: #1056517.
- also Depends: cython3-legacy in debian/tests/control
* update debian/tests
- print timings of 20 slowest tests
- reduce test verbosity
* add debian patches
- doc_sphinx6_PR2149.patch applies upstream PR#2149 to
fix doc build with latest sphinx. Closes: #1042704.
- python3.12_no_cython_support.patch skips cython runtime usage
on Python >= 3.12, which causes QobjEvo jobs to fail
(see upstream Issue#2293). Skip test_brmesolve_td.py tests
test_time_dependent_spline_in_c_ops and
test_split_operators_maintain_answer when cython support is not
available (even if cython is installed)
* clean generated cpp and doc files. Closes: #1047093.
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