Your message dated Fri, 01 Mar 2024 12:52:10 +0000
with message-id <[email protected]>
and subject line Bug#1063136: fixed in libslow5lib 0.7.0+dfsg-2.1
has caused the Debian Bug report #1063136,
regarding libslow5lib: NMU diff for 64-bit time_t transition
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1063136: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1063136
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libslow5lib
Version: 0.7.0+dfsg-2
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: [email protected]
Usertags: time-t
NOTICE: these changes must not be uploaded to unstable yet!
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
libslow5lib as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for libslow5lib
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru libslow5lib-0.7.0+dfsg/debian/changelog
libslow5lib-0.7.0+dfsg/debian/changelog
--- libslow5lib-0.7.0+dfsg/debian/changelog 2023-01-14 21:58:31.000000000
+0000
+++ libslow5lib-0.7.0+dfsg/debian/changelog 2024-02-05 08:26:15.000000000
+0000
@@ -1,3 +1,10 @@
+libslow5lib (0.7.0+dfsg-2.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Steve Langasek <[email protected]> Mon, 05 Feb 2024 08:26:15 +0000
+
libslow5lib (0.7.0+dfsg-2) unstable; urgency=medium
* Team Upload.
diff -Nru libslow5lib-0.7.0+dfsg/debian/control
libslow5lib-0.7.0+dfsg/debian/control
--- libslow5lib-0.7.0+dfsg/debian/control 2023-01-14 21:58:26.000000000
+0000
+++ libslow5lib-0.7.0+dfsg/debian/control 2024-02-05 08:26:15.000000000
+0000
@@ -21,7 +21,10 @@
Homepage: https://github.com/hasindu2008/slow5lib
Rules-Requires-Root: no
-Package: libslow5-0
+Package: libslow5-0t64
+Provides: ${t64:Provides}
+Replaces: libslow5-0
+Breaks: libslow5-0 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
@@ -49,7 +52,7 @@
Package: libslow5-dev
Architecture: any
Section: libdevel
-Depends: libslow5-0 (= ${binary:Version}),
+Depends: libslow5-0t64 (= ${binary:Version}),
${shlibs:Depends},
${misc:Depends}
Multi-Arch: same
@@ -77,7 +80,7 @@
Package: python3-slow5
Architecture: any
Section: python
-Depends: libslow5-0 (= ${binary:Version}),
+Depends: libslow5-0t64 (= ${binary:Version}),
${shlibs:Depends},
${python3:Depends},
${misc:Depends}
diff -Nru libslow5lib-0.7.0+dfsg/debian/libslow5-0.symbols
libslow5lib-0.7.0+dfsg/debian/libslow5-0.symbols
--- libslow5lib-0.7.0+dfsg/debian/libslow5-0.symbols 2023-01-14
20:35:31.000000000 +0000
+++ libslow5lib-0.7.0+dfsg/debian/libslow5-0.symbols 1970-01-01
00:00:00.000000000 +0000
@@ -1,155 +0,0 @@
-libslow5.so.0 libslow5-0 #MINVER#
- __slow5_press_free@Base 0.5.1
- __slow5_press_init@Base 0.5.1
- ks_combsort_str_slow5@Base 0.5.1
- ks_heapadjust_str_slow5@Base 0.5.1
- ks_heapmake_str_slow5@Base 0.5.1
- ks_heapsort_str_slow5@Base 0.5.1
- ks_introsort_str_slow5@Base 0.5.1
- ks_ksmall_str_slow5@Base 0.5.1
- ks_mergesort_str_slow5@Base 0.5.1
- ks_shuffle_str_slow5@Base 0.5.1
- slow5_add_rec@Base 0.5.1
- slow5_asprintf@Base 0.5.1
- slow5_ato_int16@Base 0.5.1
- slow5_ato_int32@Base 0.5.1
- slow5_ato_int64@Base 0.5.1
- slow5_ato_int8@Base 0.5.1
- slow5_ato_uint16@Base 0.5.1
- slow5_ato_uint32@Base 0.5.1
- slow5_ato_uint64@Base 0.5.1
- slow5_ato_uint8@Base 0.5.1
- slow5_aux_add@Base 0.6.0
- slow5_aux_get_char@Base 0.5.1
- slow5_aux_get_double@Base 0.5.1
- slow5_aux_get_double_array@Base 0.5.1
- slow5_aux_get_enum@Base 0.5.1
- slow5_aux_get_enum_array@Base 0.5.1
- slow5_aux_get_float@Base 0.5.1
- slow5_aux_get_float_array@Base 0.5.1
- slow5_aux_get_int16@Base 0.5.1
- slow5_aux_get_int16_array@Base 0.5.1
- slow5_aux_get_int32@Base 0.5.1
- slow5_aux_get_int32_array@Base 0.5.1
- slow5_aux_get_int64@Base 0.5.1
- slow5_aux_get_int64_array@Base 0.5.1
- slow5_aux_get_int8@Base 0.5.1
- slow5_aux_get_int8_array@Base 0.5.1
- slow5_aux_get_string@Base 0.5.1
- slow5_aux_get_uint16@Base 0.5.1
- slow5_aux_get_uint16_array@Base 0.5.1
- slow5_aux_get_uint32@Base 0.5.1
- slow5_aux_get_uint32_array@Base 0.5.1
- slow5_aux_get_uint64@Base 0.5.1
- slow5_aux_get_uint64_array@Base 0.5.1
- slow5_aux_get_uint8@Base 0.5.1
- slow5_aux_get_uint8_array@Base 0.5.1
- slow5_aux_meta_add@Base 0.5.1
- slow5_aux_meta_add_enum@Base 0.5.1
- slow5_aux_meta_enum_parse@Base 0.5.1
- slow5_aux_meta_free@Base 0.5.1
- slow5_aux_meta_init@Base 0.5.1
- slow5_aux_meta_init_empty@Base 0.5.1
- slow5_aux_set@Base 0.6.0
- slow5_aux_set_string@Base 0.6.0
- slow5_close@Base 0.5.1
- slow5_compress_footer_next@Base 0.5.1
- slow5_convert@Base 0.5.1
- slow5_data_to_str@Base 0.5.1
- slow5_decode@Base 0.7.0
- slow5_decode_record_press@Base 0.5.1
- slow5_decode_signal_press@Base 0.5.1
- slow5_double_to_str@Base 0.5.1
- slow5_encode@Base 0.6.0
- slow5_encode_record_press@Base 0.5.1
- slow5_encode_signal_press@Base 0.5.1
- slow5_eof_fwrite@Base 0.5.1
- slow5_errno_intern@Base 0.5.1
- slow5_errno_location@Base 0.5.1
- slow5_exit_condition@Base 0.5.1
- slow5_filestamps_cmp@Base 0.5.1
- slow5_float_check@Base 0.5.1
- slow5_fmt_get_name@Base 0.5.1
- slow5_fprintf_compress@Base 0.5.1
- slow5_fread_depress@Base 0.5.1
- slow5_fwrite_compress@Base 0.5.1
- slow5_get@Base 0.5.1
- slow5_get_aux_enum_labels@Base 0.5.1
- slow5_get_aux_names@Base 0.5.1
- slow5_get_aux_types@Base 0.5.1
- slow5_get_hdr_keys@Base 0.5.1
- slow5_get_idx_path@Base 0.5.1
- slow5_get_mem@Base 0.5.1
- slow5_get_next@Base 0.5.1
- slow5_get_next_bytes@Base 0.6.0
- slow5_get_next_mem@Base 0.5.1
- slow5_get_rids@Base 0.5.1
- slow5_hdr_add@Base 0.6.0
- slow5_hdr_add_attr@Base 0.5.1
- slow5_hdr_add_rg@Base 0.5.1
- slow5_hdr_add_rg_data@Base 0.5.1
- slow5_hdr_attrs_to_str@Base 0.5.1
- slow5_hdr_data_free@Base 0.5.1
- slow5_hdr_data_init@Base 0.5.1
- slow5_hdr_free@Base 0.5.1
- slow5_hdr_fwrite@Base 0.5.1
- slow5_hdr_get@Base 0.5.1
- slow5_hdr_get_data@Base 0.5.1
- slow5_hdr_init@Base 0.5.1
- slow5_hdr_init_empty@Base 0.5.1
- slow5_hdr_set@Base 0.5.1
- slow5_hdr_to_mem@Base 0.5.1
- slow5_hdr_types_to_str@Base 0.5.1
- slow5_hdr_write@Base 0.6.0
- slow5_idx_create@Base 0.5.1
- slow5_idx_free@Base 0.5.1
- slow5_idx_get@Base 0.5.1
- slow5_idx_init@Base 0.5.1
- slow5_idx_insert@Base 0.5.1
- slow5_idx_load@Base 0.5.1
- slow5_idx_to@Base 0.5.1
- slow5_idx_unload@Base 0.5.1
- slow5_idx_write@Base 0.5.1
- slow5_init@Base 0.5.1
- slow5_init_empty@Base 0.5.1
- slow5_int_check@Base 0.5.1
- slow5_is_c_label@Base 0.5.1
- slow5_is_eof@Base 0.5.1
- slow5_log_level@Base 0.5.1
- slow5_memcpy_null_type@Base 0.5.1
- slow5_memcpy_type_from_str@Base 0.5.1
- slow5_name_get_fmt@Base 0.5.1
- slow5_open@Base 0.5.1
- slow5_open_with@Base 0.5.1
- slow5_path_get_fmt@Base 0.5.1
- slow5_pread_depress@Base 0.5.1
- slow5_pread_depress_solo@Base 0.5.1
- slow5_press_free@Base 0.5.1
- slow5_press_init@Base 0.5.1
- slow5_printf_compress@Base 0.5.1
- slow5_ptr_compress@Base 0.5.1
- slow5_ptr_compress_solo@Base 0.5.1
- slow5_ptr_depress@Base 0.5.1
- slow5_ptr_depress_solo@Base 0.5.1
- slow5_rec_aux_free@Base 0.5.1
- slow5_rec_depress_parse@Base 0.5.1
- slow5_rec_free@Base 0.5.1
- slow5_rec_fwrite@Base 0.5.1
- slow5_rec_parse@Base 0.5.1
- slow5_rec_rm@Base 0.5.1
- slow5_rec_set@Base 0.5.1
- slow5_rec_set_array@Base 0.5.1
- slow5_rec_to_mem@Base 0.5.1
- slow5_set_exit_condition@Base 0.5.1
- slow5_set_log_level@Base 0.5.1
- slow5_set_press@Base 0.6.0
- slow5_signal_press_version_cmp@Base 0.5.1
- slow5_str_to_aux_type@Base 0.5.1
- slow5_strsep@Base 0.5.1
- slow5_strtod_check@Base 0.5.1
- slow5_strtof_check@Base 0.5.1
- slow5_uint_check@Base 0.5.1
- slow5_vasprintf@Base 0.5.1
- slow5_version_cmp@Base 0.5.1
- slow5_write@Base 0.6.0
- slow5_write_bytes@Base 0.6.0
diff -Nru libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.lintian-overrides
libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.lintian-overrides
--- libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.lintian-overrides
1970-01-01 00:00:00.000000000 +0000
+++ libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.lintian-overrides
2024-02-05 08:26:15.000000000 +0000
@@ -0,0 +1 @@
+libslow5-0t64: package-name-doesnt-match-sonames libslow5-0
diff -Nru libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.symbols
libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.symbols
--- libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.symbols 1970-01-01
00:00:00.000000000 +0000
+++ libslow5lib-0.7.0+dfsg/debian/libslow5-0t64.symbols 2024-02-05
08:26:15.000000000 +0000
@@ -0,0 +1,155 @@
+libslow5.so.0 libslow5-0t64 #MINVER#
+ __slow5_press_free@Base 0.5.1
+ __slow5_press_init@Base 0.5.1
+ ks_combsort_str_slow5@Base 0.5.1
+ ks_heapadjust_str_slow5@Base 0.5.1
+ ks_heapmake_str_slow5@Base 0.5.1
+ ks_heapsort_str_slow5@Base 0.5.1
+ ks_introsort_str_slow5@Base 0.5.1
+ ks_ksmall_str_slow5@Base 0.5.1
+ ks_mergesort_str_slow5@Base 0.5.1
+ ks_shuffle_str_slow5@Base 0.5.1
+ slow5_add_rec@Base 0.5.1
+ slow5_asprintf@Base 0.5.1
+ slow5_ato_int16@Base 0.5.1
+ slow5_ato_int32@Base 0.5.1
+ slow5_ato_int64@Base 0.5.1
+ slow5_ato_int8@Base 0.5.1
+ slow5_ato_uint16@Base 0.5.1
+ slow5_ato_uint32@Base 0.5.1
+ slow5_ato_uint64@Base 0.5.1
+ slow5_ato_uint8@Base 0.5.1
+ slow5_aux_add@Base 0.6.0
+ slow5_aux_get_char@Base 0.5.1
+ slow5_aux_get_double@Base 0.5.1
+ slow5_aux_get_double_array@Base 0.5.1
+ slow5_aux_get_enum@Base 0.5.1
+ slow5_aux_get_enum_array@Base 0.5.1
+ slow5_aux_get_float@Base 0.5.1
+ slow5_aux_get_float_array@Base 0.5.1
+ slow5_aux_get_int16@Base 0.5.1
+ slow5_aux_get_int16_array@Base 0.5.1
+ slow5_aux_get_int32@Base 0.5.1
+ slow5_aux_get_int32_array@Base 0.5.1
+ slow5_aux_get_int64@Base 0.5.1
+ slow5_aux_get_int64_array@Base 0.5.1
+ slow5_aux_get_int8@Base 0.5.1
+ slow5_aux_get_int8_array@Base 0.5.1
+ slow5_aux_get_string@Base 0.5.1
+ slow5_aux_get_uint16@Base 0.5.1
+ slow5_aux_get_uint16_array@Base 0.5.1
+ slow5_aux_get_uint32@Base 0.5.1
+ slow5_aux_get_uint32_array@Base 0.5.1
+ slow5_aux_get_uint64@Base 0.5.1
+ slow5_aux_get_uint64_array@Base 0.5.1
+ slow5_aux_get_uint8@Base 0.5.1
+ slow5_aux_get_uint8_array@Base 0.5.1
+ slow5_aux_meta_add@Base 0.5.1
+ slow5_aux_meta_add_enum@Base 0.5.1
+ slow5_aux_meta_enum_parse@Base 0.5.1
+ slow5_aux_meta_free@Base 0.5.1
+ slow5_aux_meta_init@Base 0.5.1
+ slow5_aux_meta_init_empty@Base 0.5.1
+ slow5_aux_set@Base 0.6.0
+ slow5_aux_set_string@Base 0.6.0
+ slow5_close@Base 0.5.1
+ slow5_compress_footer_next@Base 0.5.1
+ slow5_convert@Base 0.5.1
+ slow5_data_to_str@Base 0.5.1
+ slow5_decode@Base 0.7.0
+ slow5_decode_record_press@Base 0.5.1
+ slow5_decode_signal_press@Base 0.5.1
+ slow5_double_to_str@Base 0.5.1
+ slow5_encode@Base 0.6.0
+ slow5_encode_record_press@Base 0.5.1
+ slow5_encode_signal_press@Base 0.5.1
+ slow5_eof_fwrite@Base 0.5.1
+ slow5_errno_intern@Base 0.5.1
+ slow5_errno_location@Base 0.5.1
+ slow5_exit_condition@Base 0.5.1
+ slow5_filestamps_cmp@Base 0.5.1
+ slow5_float_check@Base 0.5.1
+ slow5_fmt_get_name@Base 0.5.1
+ slow5_fprintf_compress@Base 0.5.1
+ slow5_fread_depress@Base 0.5.1
+ slow5_fwrite_compress@Base 0.5.1
+ slow5_get@Base 0.5.1
+ slow5_get_aux_enum_labels@Base 0.5.1
+ slow5_get_aux_names@Base 0.5.1
+ slow5_get_aux_types@Base 0.5.1
+ slow5_get_hdr_keys@Base 0.5.1
+ slow5_get_idx_path@Base 0.5.1
+ slow5_get_mem@Base 0.5.1
+ slow5_get_next@Base 0.5.1
+ slow5_get_next_bytes@Base 0.6.0
+ slow5_get_next_mem@Base 0.5.1
+ slow5_get_rids@Base 0.5.1
+ slow5_hdr_add@Base 0.6.0
+ slow5_hdr_add_attr@Base 0.5.1
+ slow5_hdr_add_rg@Base 0.5.1
+ slow5_hdr_add_rg_data@Base 0.5.1
+ slow5_hdr_attrs_to_str@Base 0.5.1
+ slow5_hdr_data_free@Base 0.5.1
+ slow5_hdr_data_init@Base 0.5.1
+ slow5_hdr_free@Base 0.5.1
+ slow5_hdr_fwrite@Base 0.5.1
+ slow5_hdr_get@Base 0.5.1
+ slow5_hdr_get_data@Base 0.5.1
+ slow5_hdr_init@Base 0.5.1
+ slow5_hdr_init_empty@Base 0.5.1
+ slow5_hdr_set@Base 0.5.1
+ slow5_hdr_to_mem@Base 0.5.1
+ slow5_hdr_types_to_str@Base 0.5.1
+ slow5_hdr_write@Base 0.6.0
+ slow5_idx_create@Base 0.5.1
+ slow5_idx_free@Base 0.5.1
+ slow5_idx_get@Base 0.5.1
+ slow5_idx_init@Base 0.5.1
+ slow5_idx_insert@Base 0.5.1
+ slow5_idx_load@Base 0.5.1
+ slow5_idx_to@Base 0.5.1
+ slow5_idx_unload@Base 0.5.1
+ slow5_idx_write@Base 0.5.1
+ slow5_init@Base 0.5.1
+ slow5_init_empty@Base 0.5.1
+ slow5_int_check@Base 0.5.1
+ slow5_is_c_label@Base 0.5.1
+ slow5_is_eof@Base 0.5.1
+ slow5_log_level@Base 0.5.1
+ slow5_memcpy_null_type@Base 0.5.1
+ slow5_memcpy_type_from_str@Base 0.5.1
+ slow5_name_get_fmt@Base 0.5.1
+ slow5_open@Base 0.5.1
+ slow5_open_with@Base 0.5.1
+ slow5_path_get_fmt@Base 0.5.1
+ slow5_pread_depress@Base 0.5.1
+ slow5_pread_depress_solo@Base 0.5.1
+ slow5_press_free@Base 0.5.1
+ slow5_press_init@Base 0.5.1
+ slow5_printf_compress@Base 0.5.1
+ slow5_ptr_compress@Base 0.5.1
+ slow5_ptr_compress_solo@Base 0.5.1
+ slow5_ptr_depress@Base 0.5.1
+ slow5_ptr_depress_solo@Base 0.5.1
+ slow5_rec_aux_free@Base 0.5.1
+ slow5_rec_depress_parse@Base 0.5.1
+ slow5_rec_free@Base 0.5.1
+ slow5_rec_fwrite@Base 0.5.1
+ slow5_rec_parse@Base 0.5.1
+ slow5_rec_rm@Base 0.5.1
+ slow5_rec_set@Base 0.5.1
+ slow5_rec_set_array@Base 0.5.1
+ slow5_rec_to_mem@Base 0.5.1
+ slow5_set_exit_condition@Base 0.5.1
+ slow5_set_log_level@Base 0.5.1
+ slow5_set_press@Base 0.6.0
+ slow5_signal_press_version_cmp@Base 0.5.1
+ slow5_str_to_aux_type@Base 0.5.1
+ slow5_strsep@Base 0.5.1
+ slow5_strtod_check@Base 0.5.1
+ slow5_strtof_check@Base 0.5.1
+ slow5_uint_check@Base 0.5.1
+ slow5_vasprintf@Base 0.5.1
+ slow5_version_cmp@Base 0.5.1
+ slow5_write@Base 0.6.0
+ slow5_write_bytes@Base 0.6.0
--- End Message ---
--- Begin Message ---
Source: libslow5lib
Source-Version: 0.7.0+dfsg-2.1
Done: Benjamin Drung <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libslow5lib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Benjamin Drung <[email protected]> (supplier of updated libslow5lib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 01 Mar 2024 12:28:36 +0000
Source: libslow5lib
Architecture: source
Version: 0.7.0+dfsg-2.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Benjamin Drung <[email protected]>
Closes: 1063136
Changes:
libslow5lib (0.7.0+dfsg-2.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1063136
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libslow5lib_0.7.0+dfsg-2.1.dsc
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libslow5lib_0.7.0+dfsg-2.1.debian.tar.xz
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libslow5lib_0.7.0+dfsg-2.1_source.buildinfo
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libslow5lib_0.7.0+dfsg-2.1.dsc
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libslow5lib_0.7.0+dfsg-2.1.debian.tar.xz
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libslow5lib_0.7.0+dfsg-2.1_source.buildinfo
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