Bug#1066633: marked as done (poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration])

Debian Bug Tracking System Wed, 13 Mar 2024 16:24:36 -0700

Your message dated Wed, 13 Mar 2024 23:21:58 +0000
with message-id <[email protected]>
and subject line Bug#1066633: fixed in poa 2.0+20060928-9
has caused the Debian Bug report #1066633,
regarding poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of 
function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? 
[-Werror=implicit-function-declaration]
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1066633: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066633
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Source: poa
Version: 2.0+20060928-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration

Relevant part (hopefully):
> gcc -g -O2 -Werror=implicit-function-declaration 
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g 
> -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 
>  -c -o align_lpo_po2.o align_lpo_po2.c
> In file included from align_lpo_po2.c:2:
> align_lpo_po2.c: In function ‘get_lpo_stats’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:41:3: note: in expansion of macro ‘CALLOC’
>    41 |   CALLOC (node_type, len, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:42:3: note: in expansion of macro ‘CALLOC’
>    42 |   CALLOC (refs_from_right, len, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:43:3: note: in expansion of macro ‘CALLOC’
>    43 |   CALLOC (tmp, len, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:44:3: note: in expansion of macro ‘CALLOC’
>    44 |   CALLOC (left_links, len, LPOLetterLink_T *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:71:7: note: in expansion of macro ‘CALLOC’
>    71 |       CALLOC (left_links[i], 1, LPOLetterLink_T);
>       |       ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> fasta_format.c: In function ‘read_fasta’:
> align_lpo_po2.c: In function ‘trace_back_lpo_alignment’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:120:3: note: in expansion of macro ‘CALLOC’
>   120 |   CALLOC (x_al, len_x, LPOLetterRef_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:121:3: note: in expansion of macro ‘CALLOC’
>   121 |   CALLOC (y_al, len_y, LPOLetterRef_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> fasta_format.c:48:9: error: implicit declaration of function 
> ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? 
> [-Werror=implicit-function-declaration]
>    48 |         stringptr_cat_pos(&tmp_seq,line,&length);
>       |         ^~~~~~~~~~~~~~~~~
>       |         stringptr_cat
> align_lpo_po2.c: In function ‘align_lpo_po’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:227:3: note: in expansion of macro ‘CALLOC’
>   227 |   CALLOC (next_gap_array, max_gap_length + 2, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:228:3: note: in expansion of macro ‘CALLOC’
>   228 |   CALLOC (next_perp_gap_array, max_gap_length + 2, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:254:3: note: in expansion of macro ‘CALLOC’
>   254 |   CALLOC (move, len_y, DPMove_T *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:256:5: note: in expansion of macro ‘CALLOC’
>   256 |     CALLOC (move[i], len_x, DPMove_T);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:259:3: note: in expansion of macro ‘CALLOC’
>   259 |   CALLOC (init_col_score, len_y+1, DPScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:262:3: note: in expansion of macro ‘CALLOC’
>   262 |   CALLOC (score_rows, len_y+1, DPScore_T *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:264:3: note: in expansion of macro ‘CALLOC’
>   264 |   CALLOC (score_rows[-1], len_x+1, DPScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo_po2.c:312:5: note: in expansion of macro ‘CALLOC’
>   312 |     CALLOC (score_rows[i], len_x+1, DPScore_T);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> align_lpo_po2.c:438:44: warning: format ‘%ld’ expects argument of type ‘long 
> int’, but argument 4 has type ‘int’ [-Wformat=]
>   438 |     fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld 
> edges): ", len_x, n_edges_x, len_y, n_edges_y);
>       |                                          ~~^                          
>                   ~~~~~~~~~
>       |                                            |                          
>                   |
>       |                                            long int                   
>                   int
>       |                                          %d
> align_lpo_po2.c:438:69: warning: format ‘%ld’ expects argument of type ‘long 
> int’, but argument 6 has type ‘int’ [-Wformat=]
>   438 |     fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld 
> edges): ", len_x, n_edges_x, len_y, n_edges_y);
>       |                                                                   ~~^ 
>                                     ~~~~~~~~~
>       |                                                                     | 
>                                     |
>       |                                                                     
> long int                              int
>       |                                                                   %d
> In file included from black_flag.c:4:
> black_flag.c: In function ‘black_flag_init_args’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> black_flag.c:109:3: note: in expansion of macro ‘CALLOC’
>   109 |   CALLOC(Program_name,len,char);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> In file included from align_lpo2.c:2:
> align_lpo2.c: In function ‘get_seq_left_and_final’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:60:3: note: in expansion of macro ‘CALLOC’
>    60 |   CALLOC (is_final_node_x, len_x, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:66:3: note: in expansion of macro ‘CALLOC’
>    66 |   CALLOC (x_left, len_x, LPOLetterLink_T *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> In file included from lpo.h:6,
>                  from main.c:3:
> main.c: In function ‘main’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:70:7: note: in expansion of macro ‘CALLOC’
>    70 |       CALLOC (x_left[i], 1, LPOLetterLink_T);
>       |       ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> main.c:183:3: note: in expansion of macro ‘CALLOC’
>   183 |   CALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
>       |   ^~~~~~
> ./default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> align_lpo2.c: In function ‘trace_back_lpo_alignment’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:96:3: note: in expansion of macro ‘CALLOC’
>    96 |   CALLOC (x_al, len_x, LPOLetterRef_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> main.c:221:9: note: in expansion of macro ‘REALLOC’
>   221 |         REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
>       |         ^~~~~~~
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:97:3: note: in expansion of macro ‘CALLOC’
>    97 |   CALLOC (y_al, len_y, LPOLetterRef_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> ./default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> In file included from ./default.h:16:
> main.c:225:30: warning: format ‘%s’ expects argument of type ‘char *’, but 
> argument 3 has type ‘FILE *’ [-Wformat=]
>   225 |       WARN_MSG(USERR,(ERRTXT,"Error reading PO list file 
> %s.\nExiting",
>       |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>   226 |                       po_list_file),"$Revision: 1.2.2.9 $");
>       |                       ~~~~~~~~~~~~
>       |                       |
>       |                       FILE *
> ./black_flag.h:212:10: note: in definition of macro ‘WARN_MSG’
>   212 | (sprintf MESSAGE,\
>       |          ^~~~~~~
> main.c:225:59: note: format string is defined here
>   225 |       WARN_MSG(USERR,(ERRTXT,"Error reading PO list file 
> %s.\nExiting",
>       |                                                          ~^
>       |                                                           |
>       |                                                           char *
> align_lpo2.c: In function ‘align_lpo’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:185:3: note: in expansion of macro ‘CALLOC’
>   185 |   CALLOC (next_gap_array, max_gap_length + 2, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> main.c:254:9: note: in expansion of macro ‘REALLOC’
>   254 |         REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
>       |         ^~~~~~~
> ./default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:186:3: note: in expansion of macro ‘CALLOC’
>   186 |   CALLOC (next_perp_gap_array, max_gap_length + 2, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:199:3: note: in expansion of macro ‘CALLOC’
>   199 |   CALLOC (move, len_y, DPMove_T *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:201:5: note: in expansion of macro ‘CALLOC’
>   201 |     CALLOC (move[i], len_x, DPMove_T);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:204:3: note: in expansion of macro ‘CALLOC’
>   204 |   CALLOC (init_col_score, len_y+1, DPScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:207:3: note: in expansion of macro ‘CALLOC’
>   207 |   CALLOC (curr_score, len_x+1, DPScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> align_lpo2.c:209:3: note: in expansion of macro ‘CALLOC’
>   209 |   CALLOC (prev_score, len_x+1, DPScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> In file included from seq_util.c:2:
> seq_util.c: In function ‘read_score_matrix’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> seq_util.c:170:3: note: in expansion of macro ‘CALLOC’
>   170 |   CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> seq_util.c:171:3: note: in expansion of macro ‘CALLOC’
>   171 |   CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T);
>       |   ^~~~~~
> In file included from msa_format.h:17,
>                  from msa_format.c:17:
> msa_format.c: In function ‘read_clustal’:
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:169:7: note: in expansion of macro ‘REALLOC’
>   169 |       REALLOC (seq_names, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:171:7: note: in expansion of macro ‘REALLOC’
>   171 |       REALLOC (seq_titles, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:174:7: note: in expansion of macro ‘REALLOC’
>   174 |       REALLOC (aln_mat, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> gcc -g -O2 -Werror=implicit-function-declaration 
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g 
> -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 
>  -c -o buildup_lpo.o buildup_lpo.c
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:176:7: note: in expansion of macro ‘REALLOC’
>   176 |       REALLOC (aln_lengths, n_seqs, int);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
>   184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: 
> %s[%d].\n",\
>       |                      
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>   185 |               __FILE__,__LINE__,STRINGIFY(memptr),(NUM));   \
>       |                                                   ~~~~~
>       |                                                       |
>       |                                                       size_t {aka 
> long unsigned int}
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
>   185 |     REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), 
> char);
>       |     ^~~~~~~
> default.h:184:68: note: format string is defined here
>   184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: 
> %s[%d].\n",\
>       |                                                                   ~^
>       |                                                                    |
>       |                                                                    int
>       |                                                                   %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
>   185 |     REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), 
> char);
>       |     ^~~~~~~
> default.h:196:34: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                 ~^
>       |                                  |
>       |                                  int
>       |                                 %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
>   185 |     REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), 
> char);
>       |     ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> msa_format.c: In function ‘read_pir’:
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:248:7: note: in expansion of macro ‘REALLOC’
>   248 |       REALLOC (seq_names, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:250:7: note: in expansion of macro ‘REALLOC’
>   250 |       REALLOC (seq_titles, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:252:7: note: in expansion of macro ‘REALLOC’
>   252 |       REALLOC (aln_mat, n_seqs, char *);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:254:7: note: in expansion of macro ‘REALLOC’
>   254 |       REALLOC (aln_lengths, n_seqs, int);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
>   184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: 
> %s[%d].\n",\
>       |                      
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>   185 |               __FILE__,__LINE__,STRINGIFY(memptr),(NUM));   \
>       |                                                   ~~~~~
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
>   268 |       REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + 
> strlen(aln), char);
>       |       ^~~~~~~
> default.h:184:68: note: format string is defined here
>   184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: 
> %s[%d].\n",\
>       |                                                                   ~^
>       |                                                                    |
>       |                                                                    int
>       |                                                                   %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
>   268 |       REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + 
> strlen(aln), char);
>       |       ^~~~~~~
> default.h:196:34: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                 ~^
>       |                                  |
>       |                                  int
>       |                                 %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
>   268 |       REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + 
> strlen(aln), char);
>       |       ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> msa_format.c: In function ‘lpo_from_aln_mat’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:318:3: note: in expansion of macro ‘CALLOC’
>   318 |   CALLOC (column_ids, n_seqs+1, int *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:319:3: note: in expansion of macro ‘CALLOC’
>   319 |   CALLOC (res_ids, n_seqs+1, int *);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:326:5: note: in expansion of macro ‘CALLOC’
>   326 |     CALLOC (column_ids[i], max_aln_length, int);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:327:5: note: in expansion of macro ‘CALLOC’
>   327 |     CALLOC (res_ids[i], max_aln_length, int);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:334:3: note: in expansion of macro ‘CALLOC’
>   334 |   CALLOC (consens_row, max_aln_length, char);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:347:3: note: in expansion of macro ‘CALLOC’
>   347 |   CALLOC (lposeq, 1, LPOSequence_T);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:351:3: note: in expansion of macro ‘CALLOC’
>   351 |   CALLOC (lposeq->sequence, max_aln_length+1, char);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:369:3: note: in expansion of macro ‘REALLOC’
>   369 |   REALLOC (lposeq->sequence, len+1, char);
>       |   ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:375:5: note: in expansion of macro ‘CALLOC’
>   375 |     CALLOC (curr_seq, 1, LPOSequence_T);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:380:5: note: in expansion of macro ‘CALLOC’
>   380 |     CALLOC (curr_seq->sequence, aln_lengths[i]+1, char);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
>       |                                                         |
>       |                                                         long unsigned 
> int
> msa_format.c:398:5: note: in expansion of macro ‘REALLOC’
>   398 |     REALLOC (curr_seq->sequence, len+1, char);
>       |     ^~~~~~~
> default.h:196:39: note: format string is defined here
>   196 |       fprintf(stderr,"requested %d x %d bytes 
> \n",(NUM),sizeof(ATYPE));   \
>       |                                      ~^
>       |                                       |
>       |                                       int
>       |                                      %ld
> msa_format.c:404:5: error: implicit declaration of function 
> ‘build_seq_to_po_index’ [-Werror=implicit-function-declaration]
>   404 |     build_seq_to_po_index (lposeq);
>       |     ^~~~~~~~~~~~~~~~~~~~~
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:406:5: note: in expansion of macro ‘CALLOC’
>   406 |     CALLOC (al_x, len, int);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:407:5: note: in expansion of macro ‘CALLOC’
>   407 |     CALLOC (al_y, lposeq->length, int);
>       |     ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> cc1: some warnings being treated as errors
> msa_format.c:428:5: error: implicit declaration of function 
> ‘fuse_ring_identities’ [-Werror=implicit-function-declaration]
>   428 |     fuse_ring_identities (lposeq->length, lposeq->letter,
>       |     ^~~~~~~~~~~~~~~~~~~~
> msa_format.c: In function ‘filter_sequence_set’:
> default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but 
> argument 4 has type ‘long unsigned int’ [-Wformat=]
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
>       |                                                     |
>       |                                                     long unsigned int
> msa_format.c:485:3: note: in expansion of macro ‘CALLOC’
>   485 |   CALLOC (keep_seq, n_seqs, int);
>       |   ^~~~~~
> default.h:155:37: note: format string is defined here
>   155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   
> \
>       |                                    ~^
>       |                                     |
>       |                                     int
>       |                                    %ld
> make[2]: *** [<builtin>: fasta_format.o] Error 1


The full build log is available from:
http://qa-logs.debian.net/2024/03/13/poa_2.0+20060928-8_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

--- End Message ---

--- Begin Message ---

Source: poa
Source-Version: 2.0+20060928-9
Done: Étienne Mollier <[email protected]>

We believe that the bug you reported is fixed in the latest version of
poa, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated poa package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 13 Mar 2024 22:14:49 +0100
Source: poa
Architecture: source
Version: 2.0+20060928-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1066633
Changes:
 poa (2.0+20060928-9) unstable; urgency=medium
 .
   * d/control: add myself to uploaders.
   * fix-declaration.patch: new: fix missing declarations. (Closes: #1066633)
   * typo.patch: new: fix a typo caught by lintian.
   * d/watch: watch file version 4.
   * d/control: standards version 4.6.2.
   * d/control: debhelper-compat 13.
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 2bdf628ed3066e8568208a37a2e87905e64effdca002b8352a0a2d6ea9389dce 11704 
poa_2.0+20060928-9.debian.tar.xz
Files:
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--- End Message ---

Bug#1066633: marked as done (poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration])

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