Source: python-hdf4
Version: 0.11.4-1
Severity: serious
Tags: upstream ftbfs
Justification: makes the package in question unusable or mostly so
User: debian-...@lists.debian.org
Usertags: hdf-4.3
Dear Maintainer,
Your package FTBFS while performing test rebuilds with HDF 4.3.20.
pyhdf/hdfext_wrap.c:3845:10: fatal error: hdfi.h: No such file or directory
3845 | #include "hdfi.h" /* declares int32, float32, etc */
| ^~~~~~~~
The hdfi.h private header was removed. See:
https://github.com/HDFGroup/hdf4/blob/hdf4.3.0/doc/HDF-4.2-to-4.3-migration.md
Kind Regards,
Bas
dpkg-checkbuilddeps: error: Unmet build dependencies: pybuild-plugin-pyproject
[1;33mW: Unmet build-dependency in source[0m
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building python-hdf4 using existing
./python-hdf4_0.11.4.orig.tar.gz
dpkg-source: info: building python-hdf4 in python-hdf4_0.11.4-1.1.debian.tar.xz
dpkg-source: info: building python-hdf4 in python-hdf4_0.11.4-1.1.dsc
[0mI: Generated dsc will be overwritten by build result; not generating
changes file[0m
I: Copying COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.460859
I: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow
/var/cache/pbuilder/build/cow.460859
I: removed stale ilistfile /var/cache/pbuilder/build/cow.460859/.ilist
I: forking: chroot /var/cache/pbuilder/build/cow.460859 cowdancer-ilistcreate
/.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a
-links +1 -print0 \) | xargs -0 stat --format '%d %i ''
I: Invoking pbuilder
I: forking: pbuilder build --debbuildopts --debbuildopts --buildplace
/var/cache/pbuilder/build/cow.460859 --buildresult .. --mirror
http://ftp.nl.debian.org/debian/ --distribution sid --no-targz
--internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.460859 cow-shell'
/home/bas/tmp/debian/python-hdf4_0.11.4-1.1.dsc
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Thu Apr 4 12:47:57 CEST 2024[0m
[0mI: pbuilder-time-stamp: 1712227677[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage
for details.[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/python-hdf4_0.11.4-1.1.dsc][0m
[0mI: copying [/home/bas/tmp/debian/python-hdf4_0.11.4.orig.tar.gz][0m
[0mI: copying [/home/bas/tmp/debian/python-hdf4_0.11.4-1.1.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package
(python-hdf4_0.11.4-1.1.dsc)
dpkg-source: info: extracting python-hdf4 in python-hdf4-0.11.4
dpkg-source: info: unpacking python-hdf4_0.11.4.orig.tar.gz
dpkg-source: info: unpacking python-hdf4_0.11.4-1.1.debian.tar.xz
[0mI: Not using root during the build.[0m
[0mI: Installing the build-deps[0m
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3,
dh-sequence-python3, libhdf4-alt-dev, libjpeg-dev, pybuild-plugin-pyproject,
python3-all-dev, python3-pytest, python3-numpy, python3-setuptools, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
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Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however:
Package dh-sequence-numpy3 is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on libhdf4-alt-dev; however:
Package libhdf4-alt-dev is not installed.
pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
Package libjpeg-dev is not installed.
pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
Package pybuild-plugin-pyproject is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a}
debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a}
file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a}
icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a}
libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcurl3t64-gnutls{a}
libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a}
libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a}
libgfortran5{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-103-1t64{a}
libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a}
libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a}
libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a}
libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a}
liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnetcdf-dev{a}
libnetcdf19t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a}
libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a}
libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a}
libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a}
libpython3.12-stdlib{a} libpython3.12t64{a} librtmp1{a} libssh2-1t64{a}
libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a}
libxml2{a} libxml2-dev{a} m4{a} man-db{a} media-types{a} netbase{a}
po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a}
python3-all-dev{a} python3-build{a} python3-dev{a} python3-distutils{a}
python3-iniconfig{a} python3-installer{a} python3-lib2to3{a} python3-minimal{a}
python3-numpy{a} python3-packaging{a} python3-pkg-resources{a}
python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a}
python3-setuptools{a} python3-toml{a} python3-wheel{a} python3.11{a}
python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a}
python3.12-minimal{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev
libmail-sendmail-perl lynx pkgconf publicsuffix python3-pygments wget
0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded.
Need to get 328 kB/78.5 MB of archives. After unpacking 350 MB will be used.
Writing extended state information...
Get: 1 http://ftp.nl.debian.org/debian sid/main amd64 python3-wheel all
0.43.0-1 [52.5 kB]
Get: 2 http://ftp.nl.debian.org/debian sid/main amd64 python3-installer all
0.7.0+dfsg1-3 [18.6 kB]
Get: 3 http://ftp.nl.debian.org/debian sid/main amd64 pybuild-plugin-pyproject
all 6.20240401 [11.0 kB]
Get: 4 http://ftp.nl.debian.org/debian sid/main amd64 python3-pytest all
8.1.1-1 [245 kB]
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python3.12: can't get files for byte-compilation
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update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc
to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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Setting up libhdf4-alt-dev (4.3.0-1~exp1) ...
Processing triggers for libc-bin (2.37-15.1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
[0mI: Copying back the cached apt archive contents[0m
[0mI: new cache content 'python3-wheel_0.43.0-1_all.deb' added[0m
[0mI: new cache content 'python3-installer_0.7.0+dfsg1-3_all.deb' added[0m
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[0mI: new cache content 'python3-pytest_8.1.1-1_all.deb' added[0m
[0mI: Building the package[0m
[0mI: Running cd /build/python-hdf4-0.11.4/ && env
PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us
-uc && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent"
dpkg-genchanges -S > ../python-hdf4_0.11.4-1.1_source.changes[0m
dpkg-buildpackage: info: source package python-hdf4
dpkg-buildpackage: info: source version 0.11.4-1.1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Bas Couwenberg <sebas...@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building python-hdf4 using existing
./python-hdf4_0.11.4.orig.tar.gz
dpkg-source: info: building python-hdf4 in python-hdf4_0.11.4-1.1.debian.tar.xz
dpkg-source: info: building python-hdf4 in python-hdf4_0.11.4-1.1.dsc
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build"
module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation
--wheel --outdir /build/python-hdf4-0.11.4/.pybuild/cpython3_3.12_pyhdf
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-312
creating build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/HC.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/V.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/hdfext.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/six.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/test_SD.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/SD.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/__init__.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/error.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/VS.py -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/HDF.py -> build/lib.linux-x86_64-cpython-312/pyhdf
running egg_info
creating pyhdf.egg-info
writing pyhdf.egg-info/PKG-INFO
writing dependency_links to pyhdf.egg-info/dependency_links.txt
writing requirements to pyhdf.egg-info/requires.txt
writing top-level names to pyhdf.egg-info/top_level.txt
writing manifest file 'pyhdf.egg-info/SOURCES.txt'
reading manifest file 'pyhdf.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'doc/_build'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pyhdf.egg-info/SOURCES.txt'
copying pyhdf/hdfext.i -> build/lib.linux-x86_64-cpython-312/pyhdf
copying pyhdf/hdfext_wrap.c -> build/lib.linux-x86_64-cpython-312/pyhdf
running build_ext
building 'pyhdf._hdfext' extension
creating build/temp.linux-x86_64-cpython-312
creating build/temp.linux-x86_64-cpython-312/pyhdf
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/build/python-hdf4-0.11.4=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/hdf/
-I/usr/include/python3.12 -c pyhdf/hdfext_wrap.c -o
build/temp.linux-x86_64-cpython-312/pyhdf/hdfext_wrap.o -DNOSZIP
pyhdf/hdfext_wrap.c:3845:10: fatal error: hdfi.h: No such file or directory
3845 | #include "hdfi.h" /* declares int32, float32, etc */
| ^~~~~~~~
compilation terminated.
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:389: build: plugin pyproject failed with: exit code=1:
python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir
/build/python-hdf4-0.11.4/.pybuild/cpython3_3.12_pyhdf
I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build"
module
I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation
--wheel --outdir /build/python-hdf4-0.11.4/.pybuild/cpython3_3.11_pyhdf
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/HC.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/V.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/hdfext.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/six.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/test_SD.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/SD.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/__init__.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/error.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/VS.py -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/HDF.py -> build/lib.linux-x86_64-cpython-311/pyhdf
running egg_info
writing pyhdf.egg-info/PKG-INFO
writing dependency_links to pyhdf.egg-info/dependency_links.txt
writing requirements to pyhdf.egg-info/requires.txt
writing top-level names to pyhdf.egg-info/top_level.txt
reading manifest file 'pyhdf.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'doc/_build'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pyhdf.egg-info/SOURCES.txt'
copying pyhdf/hdfext.i -> build/lib.linux-x86_64-cpython-311/pyhdf
copying pyhdf/hdfext_wrap.c -> build/lib.linux-x86_64-cpython-311/pyhdf
running build_ext
building 'pyhdf._hdfext' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/pyhdf
x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g
-Werror=implicit-function-declaration -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g
-O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/build/python-hdf4-0.11.4=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/hdf/
-I/usr/include/python3.11 -c pyhdf/hdfext_wrap.c -o
build/temp.linux-x86_64-cpython-311/pyhdf/hdfext_wrap.o -DNOSZIP
pyhdf/hdfext_wrap.c:3845:10: fatal error: hdfi.h: No such file or directory
3845 | #include "hdfi.h" /* declares int32, float32, etc */
| ^~~~~~~~
compilation terminated.
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:389: build: plugin pyproject failed with: exit code=1:
python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir
/build/python-hdf4-0.11.4/.pybuild/cpython3_3.11_pyhdf
dh_auto_build: error: pybuild --build -i python{version} -p "3.12 3.11"
returned exit code 13
make: *** [debian/rules:12: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
[0mI: copying local configuration[0m
[0;31mE: Failed autobuilding of package[0m
[0mI: unmounting dev/ptmx filesystem[0m
[0mI: unmounting dev/pts filesystem[0m
[0mI: unmounting dev/shm filesystem[0m
[0mI: unmounting proc filesystem[0m
[0mI: unmounting sys filesystem[0m
I: Cleaning COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.460859
