Your message dated Mon, 15 Apr 2024 13:32:29 +0200
with message-id <a4583ffd-ac0c-4049-9120-cc42cbd7e...@debian.org>
and subject line Re: prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit
declaration of function ‘yylex’ [-Werror=implicit-function-declaration]
has caused the Debian Bug report #1066653,
regarding prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit declaration of
function ‘yylex’ [-Werror=implicit-function-declaration]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1066653: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066653
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: prime-phylo
Version: 1.0.11-10
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile &&
> /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE
> -Dprime_phylo_sfile_EXPORTS
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile
> -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile
> -I/usr/lib/x86_64-linux-gnu/openmpi/include
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx
> -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime
> -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime
> -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2
> -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall
> -fexceptions -g -fPIC -MD -MT
> src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -MF
> CMakeFiles/prime-phylo-sfile.dir/sfile.c.o.d -o
> CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c: In
> function ‘yyparse’:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c:1096:16:
> error: implicit declaration of function ‘yylex’
> [-Werror=implicit-function-declaration]
> 1096 | yychar = yylex ();
> | ^~~~~
> gb.y: In function ‘yyerror’:
> gb.y:291:70: error: implicit declaration of function ‘linenumber’
> [-Werror=implicit-function-declaration]
> gb.y: In function ‘add_to_seq’:
> gb.y:402:9: warning: unused variable ‘new_buf’ [-Wunused-variable]
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c: In function ‘main’:
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:17:10: error: implicit
> declaration of function ‘strcmp’ [-Werror=implicit-function-declaration]
> 17 | if (!strcmp(argv[opt], "-d")) {
> | ^~~~~~
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:8:1: note: include
> ‘<string.h>’ or provide a declaration of ‘strcmp’
> 7 | #include "gb.tab.h"
> +++ |+#include <string.h>
> 8 |
> seqreader.l: In function ‘seq_read’:
> seqreader.l:270:9: warning: unused variable ‘code’ [-Wunused-variable]
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c: At top
> level:
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16:
> warning: ‘input’ defined but not used [-Wunused-function]
> 1864 | static int input (void)
> | ^~~~~
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17:
> warning: ‘yyunput’ defined but not used [-Wunused-function]
> 1821 | static void yyunput (int c, char * yy_bp )
> | ^~~~~~~
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function ‘seq_print’:
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format ‘%d’
> expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=]
> 265 | printf("%9d", char_counter + 1);
> | ^~~~~ ~~~~~~~~~~~~~~~~
> | |
> | long int
> /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable
> ‘date’ set but not used [-Wunused-but-set-variable]
> 212 | char *top, *date;
> | ^~~~
> cc1: some warnings being treated as errors
> make[3]: ***
> [src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make:90:
> src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/03/13/prime-phylo_1.0.11-10_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Version: 1.0.11-11
Oops, forgot to mention this in the Changelog
OpenPGP_signature.asc
Description: OpenPGP digital signature
--- End Message ---
