Source: r-cran-seuratobject
Version: 5.0.1-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-arm64
Hi,
During a rebuild of all packages in sid, your package failed to build
on arm64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed
> 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
> sed -i "s/r-cran-matrix[^,]*/r-cran-matrix (>= ${rmbversion})/"
> debian/*substvars
> rversion=`dpkg -l r-base-core | grep 'ii' | sed
> 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9]\+[[:space:]]\+.*/\1/'`; \
> sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/"
> debian/*substvars
> dh_gencontrol
> dpkg-gencontrol: warning: can't parse dependency r-base-core (>= ii
> r-base-core 4.3.3-3+b1 arm64 GNU R core of statistical
> computation and graphics system)
> dpkg-gencontrol: error: parsing package 'r-cran-seuratobject' Depends field:
> r-api-4.0, r-base-core (>= ii r-base-core 4.3.3-3+b1 arm64 GNU R
> core of statistical computation and graphics system) , , r-cran-sp (>=
> 1.5.0), r-cran-future, r-cran-future.apply, r-cran-matrix (>= 1.6-5-1),
> r-cran-progressr, r-cran-rcpp (>= 1.0.5), r-cran-rlang (>= 0.4.7),
> r-cran-spam, r-cran-lifecycle, r-cran-generics, r-cran-rcpp, r-cran-rcppeigen,
> libc6 (>= 2.17), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1),
>
> dh_gencontrol: error: dh_gencontrol: error: dpkg-gencontrol
> -pr-cran-seuratobject -ldebian/changelog
> -Tdebian/r-cran-seuratobject.substvars -cdebian/control
> -Pdebian/.debhelper/r-cran-seuratobject/dbgsym-root -UPre-Depends
> -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts
> -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols
> -UProtected -UBuilt-Using -UStatic-Built-Using
> -DPackage=r-cran-seuratobject-dbgsym "-DDepends=r-cran-seuratobject (=
> \${binary:Version})" "-DDescription=debug symbols for r-cran-seuratobject"
> -DBuild-Ids=4f1c07f630f9d500c3cba6813ed40318efbe3d1c -DSection=debug
> -UMulti-Arch -UReplaces -UBreaks returned exit code 25
>
> dh_gencontrol: error: Aborting due to earlier error
> make[1]: *** [debian/rules:9: override_dh_gencontrol] Error 25
The full build log is available from:
http://qa-logs.debian.net/2024/04/20/r-cran-seuratobject_5.0.1-1_unstable-arm64.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
