Package: src:toil
Version: 6.1.0-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
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[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
running config
I: pybuild base:311: python3.11 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:311: /usr/bin/python3.12 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
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copying src/toil/deferred.py ->
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copying src/toil/serviceManager.py ->
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copying src/toil/realtimeLogger.py ->
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copying src/toil/leader.py ->
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copying src/toil/bus.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_toil/build/toil
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copying src/toil/statsAndLogging.py ->
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creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/options
copying src/toil/test/options/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/options
copying src/toil/test/options/options.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/options
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/utils
copying src/toil/test/utils/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/utils
copying src/toil/test/utils/toilKillTest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/utils
copying src/toil/test/utils/toilDebugTest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/utils
copying src/toil/test/utils/utilsTest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/utils
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/server
copying src/toil/test/server/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/server
copying src/toil/test/server/serverTest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/server
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_iam.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_utils.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
copying src/toil/test/lib/aws/test_s3.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/lib/aws
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
copying src/toil/test/provisioners/aws/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
copying src/toil/test/provisioners/aws/awsProvisionerTest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/provisioners/aws
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/tasks.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/abstract_backend.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/toil_backend.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
copying src/toil/server/wes/amazon_wes_utils.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/wes
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
copying src/toil/server/cli/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
copying src/toil/server/cli/wes_cwl_runner.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
copying src/toil/server/api_spec/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
copying src/toil/test/cwl/colon_test_output_job.yaml ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/conditional_wf.yaml ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/mpi_simple.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revsort2.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/stream.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download_directory.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/preemptible_expression.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download_subdirectory.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/directory_from_directory.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo_string_scatter_capture_stdout.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo-stdout-log-dir.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo-stderr.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/load_contents.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/alwaysfails.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_detection_at_root.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/preemptible.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_detection.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/file_from_directory.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/colon_test_output.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/seqtk_seq.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/glob_dir.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revtool2.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/s3_secondary_file.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/download.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/echo_string.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/conditional_wf.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/sorttool.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/test_filename_conflict_resolution.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revtool.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/revsort.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/test/cwl/nvidia_smi.cwl ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/test/cwl
copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/build/toil/server/api_spec
PYTHONPATH=/<<PKGBUILDDIR>>/src /usr/bin/make -C docs man SPHINXOPTS=""
make[2]: Entering directory '/<<PKGBUILDDIR>>/docs'
Running Sphinx v7.2.6
Configuration error:
There is a programmable error in your configuration file:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/sphinx/config.py", line 358, in
eval_config_file
exec(code, namespace) # NoQA: S102
^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/docs/conf.py", line 17, in <module>
import toil.version
File "/<<PKGBUILDDIR>>/src/toil/__init__.py", line 25, in <module>
from pytz import timezone
ModuleNotFoundError: No module named 'pytz'
make[2]: *** [Makefile:20: man] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/docs'
make[1]: *** [debian/rules:15: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202404/
About the archive rebuild: The build was made on virtual machines
of type m6a.large from AWS, using sbuild and a reduced chroot
with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
