Your message dated Sun, 28 Jul 2024 20:54:30 +0000
with message-id <[email protected]>
and subject line Bug#1077347: fixed in libsis-jhdf5-java 19.04.1+dfsg-6
has caused the Debian Bug report #1077347,
regarding libsis-jhdf5-java: FTBFS: h5lHelperImp.c:457:30: error: passing
argument 1 of ‘h5str_array_free’ from incompatible pointer type
[-Wincompatible-pointer-types]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1077347: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1077347
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libsis-jhdf5-java
Version: 19.04.1+dfsg-5
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20240727 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> cc -Wdate-time -D_FORTIFY_SOURCE=2
> -I/usr/lib/jvm/java-17-openjdk-amd64/include
> -I/usr/lib/jvm/java-17-openjdk-amd64/include/linux -Ijni -g -O2
> -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared
> -fPIC -Wl,--exclude-libs,ALL \
> -I/usr/lib/jvm/default-java/include/ -I/usr/include/hdf5/serial \
> *.c jni/*.c -o libsis-jhdf5.so -lz -lhdf5_serial
> In file included from h5lHelperImp.c:19:
> h5lHelperImp.c: In function
> ‘Java_ch_systemsx_cisd_hdf5_hdf5lib_HDFHelper__1H5Lget_1link_1info’:
> jni/h5jni.h:125:20: warning: assignment discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 125 | (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr),
> &isCopy); \
> | ^
> h5lHelperImp.c:124:5: note: in expansion of macro ‘PIN_JAVA_STRING’
> 124 | PIN_JAVA_STRING(object_name, oName);
> | ^~~~~~~~~~~~~~~
> h5lHelperImp.c: In function
> ‘Java_ch_systemsx_cisd_hdf5_hdf5lib_HDFHelper__1H5Lget_1link_1names_1all’:
> jni/h5jni.h:125:20: warning: assignment discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 125 | (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr),
> &isCopy); \
> | ^
> h5lHelperImp.c:245:5: note: in expansion of macro ‘PIN_JAVA_STRING’
> 245 | PIN_JAVA_STRING(group_name, gName);
> | ^~~~~~~~~~~~~~~
> h5lHelperImp.c: In function ‘link_info_all’:
> h5lHelperImp.c:325:55: warning: assignment discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 325 | *(info->linkname+info->count) = obj_path;
> | ^
> h5lHelperImp.c:326:56: warning: assignment discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 326 | *(info->linkfname+info->count) = filename;
> | ^
> h5lHelperImp.c: In function
> ‘Java_ch_systemsx_cisd_hdf5_hdf5lib_HDFHelper__1H5Lget_1link_1info_1all’:
> jni/h5jni.h:125:20: warning: assignment discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 125 | (localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr),
> &isCopy); \
> | ^
> h5lHelperImp.c:377:5: note: in expansion of macro ‘PIN_JAVA_STRING’
> 377 | PIN_JAVA_STRING(group_name, gName);
> | ^~~~~~~~~~~~~~~
> h5lHelperImp.c:457:30: error: passing argument 1 of ‘h5str_array_free’ from
> incompatible pointer type [-Wincompatible-pointer-types]
> 457 | h5str_array_free(buf, n);
> | ^~~
> | |
> | void **
> In file included from h5lHelperImp.c:20:
> jni/h5util.h:47:40: note: expected ‘char **’ but argument is of type ‘void **’
> 47 | extern void h5str_array_free(char **strs, size_t len);
> | ~~~~~~~^~~~
> h5lHelperImp.c:486:30: error: passing argument 1 of ‘h5str_array_free’ from
> incompatible pointer type [-Wincompatible-pointer-types]
> 486 | h5str_array_free(buf, n);
> | ^~~
> | |
> | void **
> jni/h5util.h:47:40: note: expected ‘char **’ but argument is of type ‘void **’
> 47 | extern void h5str_array_free(char **strs, size_t len);
> | ~~~~~~~^~~~
> jni/h5aImp.c: In function ‘H5AwriteVL_asstr’:
> jni/h5aImp.c:306:10: error: assignment to ‘char **’ from incompatible pointer
> type ‘hvl_t *’ [-Wincompatible-pointer-types]
> 306 | strs =(hvl_t*)HDcalloc((size_t)n, sizeof(hvl_t));
> | ^
> In file included from jni/h5util.h:23,
> from jni/h5dImp.c:29:
> jni/h5dImp.c: In function ‘H5DwriteVL_asstr’:
> jni/h5jni.h:88:18: warning: initialization discards ‘const’ qualifier from
> pointer target type [-Wdiscarded-qualifiers]
> 88 | #define ENVPTR (*env)
> | ^
> jni/h5dImp.c:1375:30: note: in expansion of macro ‘ENVPTR’
> 1375 | char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0);
> | ^~~~~~
> jni/h5util.c: In function ‘h5str_convert’:
> jni/h5util.c:336:27: warning: too many arguments for format
> [-Wformat-extra-args]
> 336 | sscanf(token, "%%lf", &tmp_double);
> | ^~~~~~
> jni/h5util.c:364:34: warning: format ‘%hu’ expects argument of type ‘short
> unsigned int *’, but argument 3 has type ‘unsigned char *’ [-Wformat=]
> 364 | sscanf(token, "%hu", &tmp_uchar);
> | ~~^ ~~~~~~~~~~
> | | |
> | | unsigned char *
> | short unsigned int *
> | %hhu
> jni/h5util.c:370:34: warning: format ‘%hd’ expects argument of type ‘short
> int *’, but argument 3 has type ‘char *’ [-Wformat=]
> 370 | sscanf(token, "%hd", &tmp_char);
> | ~~^ ~~~~~~~~~
> | | |
> | | char *
> | short int *
> | %hhd
> jni/h5util.c:392:33: warning: format ‘%u’ expects argument of type ‘unsigned
> int *’, but argument 3 has type ‘short unsigned int *’ [-Wformat=]
> 392 | sscanf(token, "%u", &tmp_ushort);
> | ~^ ~~~~~~~~~~~
> | | |
> | | short unsigned int *
> | unsigned int *
> | %hu
> jni/h5util.c:398:33: warning: format ‘%d’ expects argument of type ‘int *’,
> but argument 3 has type ‘short int *’ [-Wformat=]
> 398 | sscanf(token, "%d", &tmp_short);
> | ~^ ~~~~~~~~~~
> | | |
> | | short int *
> | int *
> | %hd
> make[1]: *** [debian/rules:33: override_dh_auto_build] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/07/27/libsis-jhdf5-java_19.04.1+dfsg-5_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240727;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240727&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libsis-jhdf5-java
Source-Version: 19.04.1+dfsg-6
Done: Pierre Gruet <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libsis-jhdf5-java, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <[email protected]> (supplier of updated libsis-jhdf5-java package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 28 Jul 2024 22:29:02 +0200
Source: libsis-jhdf5-java
Architecture: source
Version: 19.04.1+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Pierre Gruet <[email protected]>
Closes: 1077347
Changes:
libsis-jhdf5-java (19.04.1+dfsg-6) unstable; urgency=medium
.
* Fixing more gcc14 issues with incompatible pointer types (Closes: #1077347)
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