Your message dated Fri, 03 Jan 2025 10:12:56 +0000
with message-id <[email protected]>
and subject line Bug#1090200: fixed in cdk 1:2.9-3
has caused the Debian Bug report #1090200,
regarding cdk: FTBFS: [ERROR] Cannot find parent dependency
org.openscience.cdk:cdk-app:pom:2.9
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1090200: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1090200
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:cdk
Version: 1:2.9-2
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
mh_patchpoms -plibcdk-java --debian-build --keep-pom-version
--maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
[ERROR] Cannot find parent dependency org.openscience.cdk:cdk-app:pom:2.9, use
--no-parent option to resolve this issue or install the parent POM in the Maven
repository
dh_auto_build
/usr/lib/jvm/default-java/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
-Dclassworlds.conf=/etc/maven/m2-debian.conf
-Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
-Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
-DskipTests -Dnotimestamp=true -Dlocale=en_US
OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were
deprecated in JDK 13 and will likely be removed in a future release.
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[... snipped ...]
[INFO] from display/render/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-render ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/display/render/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-render
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 20 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java:
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java
uses or overrides a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java:
Recompile with -Xlint:deprecation for details.
[INFO]
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java:
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java
uses unchecked or unsafe operations.
[INFO]
/<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java:
Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-render ---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-render ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-render ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-render ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-render ---
[INFO] Building jar: /<<PKGBUILDDIR>>/display/render/target/cdk-render-2.9.jar
[INFO]
[INFO] ----------------< org.openscience.cdk:cdk-renderbasic >-----------------
[INFO] Building cdk-renderbasic 2.9 [41/64]
[INFO] from display/renderbasic/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-renderbasic ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/display/renderbasic/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @
cdk-renderbasic ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 45 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
/<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/LineTo.java:
Some input files use or override a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/LineTo.java:
Recompile with -Xlint:deprecation for details.
[INFO]
/<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java:
/<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java
uses unchecked or unsafe operations.
[INFO]
/<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java:
Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @
cdk-renderbasic ---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-renderbasic ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-renderbasic ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderbasic
---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderbasic ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/display/renderbasic/target/cdk-renderbasic-2.9.jar
[INFO]
[INFO] -----------------< org.openscience.cdk:cdk-renderawt >------------------
[INFO] Building cdk-renderawt 2.9 [42/64]
[INFO] from display/renderawt/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-renderawt ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/display/renderawt/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @
cdk-renderawt ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 2 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-renderawt
---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-renderawt ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-renderawt ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderawt ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderawt ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/display/renderawt/target/cdk-renderawt-2.9.jar
[INFO]
[INFO] ----------------< org.openscience.cdk:cdk-renderextra >-----------------
[INFO] Building cdk-renderextra 2.9 [43/64]
[INFO] from display/renderextra/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-renderextra ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/display/renderextra/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @
cdk-renderextra ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 20 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @
cdk-renderextra ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-renderextra ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-renderextra ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderextra
---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderextra ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/display/renderextra/target/cdk-renderextra-2.9.jar
[INFO]
[INFO] --------------------< org.openscience.cdk:cdk-misc >--------------------
[INFO] Building cdk-misc 2.9 [44/64]
[INFO] from misc/pom.xml
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-misc ---
[WARNING] Ignoring project type pom - supportedProjectTypes = [jar, bundle]
[INFO]
[INFO] ------------------< org.openscience.cdk:cdk-control >-------------------
[INFO] Building cdk-control 2.9 [45/64]
[INFO] from misc/control/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-control ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/misc/control/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-control
---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 5 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-control
---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-control ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-control ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-control ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-control ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/control/target/cdk-control-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-extra >--------------------
[INFO] Building cdk-extra 2.9 [46/64]
[INFO] from misc/extra/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-extra ---
[INFO] Copying 7 resources from src/main/resources to target/classes
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-extra
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 47 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
/<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java:
Some input files use or override a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java:
Recompile with -Xlint:deprecation for details.
[INFO]
/<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java:
Some input files use unchecked or unsafe operations.
[INFO]
/<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java:
Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-extra ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-extra ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-extra ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-extra ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-extra ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/extra/target/cdk-extra-2.9.jar
[INFO]
[INFO] --------------------< org.openscience.cdk:cdk-diff >--------------------
[INFO] Building cdk-diff 2.9 [47/64]
[INFO] from misc/diff/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-core:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-diff ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/misc/diff/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-diff ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 24 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
/<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java:
/<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java
uses or overrides a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java:
Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-diff ---
[WARNING] The artifact org.hamcrest:hamcrest-core:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-diff ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-diff ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-diff ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-diff ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/diff/target/cdk-diff-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-log4j >--------------------
[INFO] Building cdk-log4j 2.9 [48/64]
[INFO] from misc/log4j/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-log4j ---
[INFO] Copying 1 resource from src/main/resources to target/classes
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-log4j
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-log4j ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-log4j ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-log4j ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-log4j ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-log4j ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/log4j/target/cdk-log4j-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-slf4j >--------------------
[INFO] Building cdk-slf4j 2.9 [49/64]
[INFO] from misc/slf4j/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-slf4j ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/misc/slf4j/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-slf4j
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-slf4j ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-slf4j ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-slf4j ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-slf4j ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-slf4j ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/slf4j/target/cdk-slf4j-2.9.jar
[INFO]
[INFO] ------------------< org.openscience.cdk:cdk-libiomd >-------------------
[INFO] Building cdk-libiomd 2.9 [50/64]
[INFO] from storage/libiomd/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-libiomd ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/storage/libiomd/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-libiomd
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 5 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-libiomd
---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-libiomd ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-libiomd ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-libiomd ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-libiomd ---
[INFO] Building jar: /<<PKGBUILDDIR>>/storage/libiomd/target/cdk-libiomd-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-pdbcml >-------------------
[INFO] Building cdk-pdbcml 2.9 [51/64]
[INFO] from storage/pdbcml/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-pdbcml ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/storage/pdbcml/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-pdbcml
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-pdbcml ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-pdbcml ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-pdbcml ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-pdbcml ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-pdbcml ---
[INFO] Building jar: /<<PKGBUILDDIR>>/storage/pdbcml/target/cdk-pdbcml-2.9.jar
[INFO]
[INFO] --------------< org.openscience.cdk:cdk-jniinchi-support >--------------
[INFO] Building cdk-jniinchi-support 2.9 [52/64]
[INFO] from storage/jniinchi-support/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @
cdk-jniinchi-support ---
[INFO] skip non existing resourceDirectory
/<<PKGBUILDDIR>>/storage/jniinchi-support/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @
cdk-jniinchi-support ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 2 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @
cdk-jniinchi-support ---
[WARNING] Manifest org.openscience.cdk:cdk-jniinchi-support:jar:2.9 : Unused
Export-Package instructions: [org.openscience.*]
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @
cdk-jniinchi-support ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @
cdk-jniinchi-support ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @
cdk-jniinchi-support ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-jniinchi-support ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/storage/jniinchi-support/target/cdk-jniinchi-support-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-inchi >--------------------
[INFO] Building cdk-inchi 2.9 [53/64]
[INFO] from storage/inchi/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The POM for io.github.dan2097:jna-inchi-core:jar:debian is missing,
no dependency information available
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated
to org.hamcrest:hamcrest:jar:debian
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for cdk 2.9:
[INFO]
[INFO] cdk ................................................ SUCCESS [ 0.392 s]
[INFO] cdk-base ........................................... SUCCESS [ 0.002 s]
[INFO] cdk-interfaces ..................................... SUCCESS [ 1.450 s]
[INFO] cdk-core ........................................... SUCCESS [ 1.403 s]
[INFO] cdk-standard ....................................... SUCCESS [ 0.915 s]
[INFO] cdk-atomtype ....................................... SUCCESS [ 0.100 s]
[INFO] cdk-valencycheck ................................... SUCCESS [ 0.141 s]
[INFO] cdk-data ........................................... SUCCESS [ 0.546 s]
[INFO] cdk-silent ......................................... SUCCESS [ 0.401 s]
[INFO] cdk-datadebug ...................................... SUCCESS [ 0.406 s]
[INFO] cdk-isomorphism .................................... SUCCESS [ 0.309 s]
[INFO] cdk-dict ........................................... SUCCESS [ 0.076 s]
[INFO] cdk-reaction ....................................... SUCCESS [ 0.245 s]
[INFO] cdk-storage ........................................ SUCCESS [ 0.003 s]
[INFO] cdk-ioformats ...................................... SUCCESS [ 0.187 s]
[INFO] cdk-ctab ........................................... SUCCESS [ 0.328 s]
[INFO] cdk-tool ........................................... SUCCESS [ 0.003 s]
[INFO] cdk-smarts ......................................... SUCCESS [ 0.143 s]
[INFO] cdk-formula ........................................ SUCCESS [ 0.178 s]
[INFO] cdk-descriptor ..................................... SUCCESS [ 0.003 s]
[INFO] cdk-fingerprint .................................... SUCCESS [ 0.268 s]
[INFO] cdk-cip ............................................ SUCCESS [ 0.082 s]
[INFO] cdk-signature ...................................... SUCCESS [ 0.079 s]
[INFO] cdk-qsar ........................................... SUCCESS [ 0.063 s]
[INFO] cdk-charges ........................................ SUCCESS [ 0.100 s]
[INFO] cdk-forcefield ..................................... SUCCESS [ 0.165 s]
[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.177 s]
[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.064 s]
[INFO] cdk-io ............................................. SUCCESS [ 0.365 s]
[INFO] cdk-libiocml ....................................... SUCCESS [ 0.139 s]
[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.084 s]
[INFO] cdk-smiles ......................................... SUCCESS [ 0.218 s]
[INFO] cdk-hash ........................................... SUCCESS [ 0.118 s]
[INFO] cdk-fragment ....................................... SUCCESS [ 0.075 s]
[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.342 s]
[INFO] cdk-pdb ............................................ SUCCESS [ 0.191 s]
[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.082 s]
[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.038 s]
[INFO] cdk-display ........................................ SUCCESS [ 0.003 s]
[INFO] cdk-render ......................................... SUCCESS [ 0.088 s]
[INFO] cdk-renderbasic .................................... SUCCESS [ 0.261 s]
[INFO] cdk-renderawt ...................................... SUCCESS [ 0.078 s]
[INFO] cdk-renderextra .................................... SUCCESS [ 0.128 s]
[INFO] cdk-misc ........................................... SUCCESS [ 0.003 s]
[INFO] cdk-control ........................................ SUCCESS [ 0.039 s]
[INFO] cdk-extra .......................................... SUCCESS [ 0.246 s]
[INFO] cdk-diff ........................................... SUCCESS [ 0.080 s]
[INFO] cdk-log4j .......................................... SUCCESS [ 0.056 s]
[INFO] cdk-slf4j .......................................... SUCCESS [ 0.046 s]
[INFO] cdk-libiomd ........................................ SUCCESS [ 0.080 s]
[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.072 s]
[INFO] cdk-jniinchi-support ............................... SUCCESS [ 0.034 s]
[INFO] cdk-inchi .......................................... FAILURE [ 0.009 s]
[INFO] cdk-sdg ............................................ SKIPPED
[INFO] cdk-builder3d ...................................... SKIPPED
[INFO] cdk-builder3dtools ................................. SKIPPED
[INFO] cdk-group .......................................... SKIPPED
[INFO] cdk-pcore .......................................... SKIPPED
[INFO] cdk-structgen ...................................... SKIPPED
[INFO] cdk-tautomer ....................................... SKIPPED
[INFO] cdk-model .......................................... SKIPPED
[INFO] cdk-legacy ......................................... SKIPPED
[INFO] cdk-app ............................................ SKIPPED
[INFO] cdk-depict ......................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11.396 s
[INFO] Finished at: 2024-12-14T17:27:55Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project cdk-inchi: Could not resolve
dependencies for project org.openscience.cdk:cdk-inchi:jar:2.9: Cannot access
ossrh (https://s01.oss.sonatype.org/content/repositories/snapshots) in offline
mode and the artifact io.github.dan2097:jna-inchi-core:jar:debian has not been
downloaded from it before. -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <args> -rf :cdk-inchi
dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
-Dclassworlds.conf=/etc/maven/m2-debian.conf
-Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
-Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
-DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: cdk
Source-Version: 1:2.9-3
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
cdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated cdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 03 Jan 2025 04:24:04 -0500
Source: cdk
Architecture: source
Version: 1:2.9-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers
<[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1090200
Changes:
cdk (1:2.9-3) unstable; urgency=medium
.
* Ignore jna-inchi-core (Closes: #1090200)
* Update debian/copyright.
* Simplify debian/rules.
Checksums-Sha1:
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Files:
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