Your message dated Tue, 14 Jan 2025 15:18:26 +0000
with message-id <[email protected]>
and subject line Bug#1092510: fixed in python-freecontact 1.1-9
has caused the Debian Bug report #1092510,
regarding python-freecontact: FTBFS: ImportError:
/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol:
PyObject_DelAttr
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1092510: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1092510
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-freecontact
Version: 1.1-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20250107 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/build/reproducible-path/python-freecontact-1.1'
> PYBUILD_SYSTEM=custom \
> PYBUILD_TEST_ARGS="{interpreter}
> /build/reproducible-path/python-freecontact-1.1/test/test01.py" \
> dh_auto_test
> dh_auto_test: warning: warning: pybuild does not support building out of
> source tree. In source building enforced.
> pybuild --test -i python{version} -p "3.12 3.13"
> I: pybuild base:311: python3.12
> /build/reproducible-path/python-freecontact-1.1/test/test01.py
> Traceback (most recent call last):
> File "/build/reproducible-path/python-freecontact-1.1/test/test01.py", line
> 18, in <module>
> import freecontact
> ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined
> symbol: PyObject_DelAttr
> E: pybuild pybuild:389: test: plugin custom failed with: exit code=1:
> python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py
> I: pybuild base:311: python3.13
> /build/reproducible-path/python-freecontact-1.1/test/test01.py
> ..will use 1 OMP threads
> SSE2 veczweight, wchunk = 64
> total weight (variation) of alignment = 620.777515304633
>
> seq weight loop for 1000 seqs took 0.003128 secs
> will use 1 OMP threads
> calculated column aa frequencies, gap cols = 4
> calculated pair frequency table in 0.090502 secs
> collected apc_mean[MI] = 0.174031486973761
> aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) =
> 0.999994420985606
> formed covariance matrix (122/126,4)
> LU factorization took 3.70552 secs, inverted matrix (incl LUf) in 11.638 secs
> density of inverse covariance matrix = 1 (cksum 346842.2)
> went back to gapped (126) wwi matrix
> collected apc_mean[l1norm] = 117.987054769839
> collected apc_mean[fro] = 3.35437751555787
> all done in 11.9483 secs
> will use 1 OMP threads
> SSE2 veczweight, wchunk = 64
> total weight (variation) of alignment = 561.595172234625
>
> seq weight loop for 1000 seqs took 0.003001 secs
> will use 1 OMP threads
> calculated column aa frequencies, gap cols = 4
> calculated pair frequency table in 0.070504 secs
> collected apc_mean[MI] = 0.165528914074767
> aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) =
> 0.999988196197513
> formed covariance matrix (126/126,4)
> cov matrix Cholesky... not positive definite, dmean dev: 0.0457782
> cov matrix Cholesky... not positive definite, dmean dev: 0.0412004
> cov matrix Cholesky... not positive definite, dmean dev: 0.0370804
> cov matrix Cholesky... not positive definite, dmean dev: 0.0333723
> cov matrix Cholesky... not positive definite, dmean dev: 0.0300351
> cov matrix Cholesky... not positive definite, dmean dev: 0.0270316
> cov matrix Cholesky... not positive definite, dmean dev: 0.0243284
> cov matrix Cholesky... not positive definite, dmean dev: 0.0218956
> cov matrix Cholesky... not positive definite, dmean dev: 0.019706
> cov matrix Cholesky... not positive definite, dmean dev: 0.0177354
> cov matrix Cholesky... not positive definite, dmean dev: 0.0159619
> cov matrix Cholesky... not positive definite, dmean dev: 0.0143657
> cov matrix Cholesky... not positive definite, dmean dev: 0.0129291
> cov matrix Cholesky...
> shrank covariance matrix in 4.89104 secs
> will try rho 0.00178064, exact solution
> [1K[1G iteration = 1[1K[1G iteration = 2[1K[1G iteration = 3will
> use 1 OMP threads
> SSE2 veczweight, wchunk = 64
> total weight (variation) of alignment = 620.777515304633
> will use 1 OMP threads
> calculated column aa frequencies, gap cols = 4
> calculated pair frequency table in 0.06468 secs
> collected apc_mean[MI] = 0.174031486973761
> aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) =
> 0.999994420985606
> formed covariance matrix (122/126,4)
> LU factorization took 3.53366 secs, inverted matrix (incl LUf) in 12.7405 secs
> density of inverse covariance matrix = 1 (cksum 346842.2)
> went back to gapped (126) wwi matrix
> collected apc_mean[l1norm] = 117.987054769839
> collected apc_mean[fro] = 3.35437751555787
> .
> ----------------------------------------------------------------------
> Ran 3 tests in 32.032s
>
> OK
> rm -fr -- /tmp/dh-xdg-rundir-zIZR6E00
> dh_auto_test: error: pybuild --test -i python{version} -p "3.12 3.13"
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2025/01/07/python-freecontact_1.1-8_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250107;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250107&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: python-freecontact
Source-Version: 1.1-9
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-freecontact, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated python-freecontact
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 14 Jan 2025 18:45:20 +0530
Source: python-freecontact
Architecture: source
Version: 1.1-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 1092510
Changes:
python-freecontact (1.1-9) unstable; urgency=medium
.
* Team Upload.
* Link against correct libboost as per python
interpreter version (Closes: #1092510)
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