Source: iqtree Version: 2.0.7+dfsg-1 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, iqtree failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] Unpacking libopenmpi40:arm64 (5.0.8-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../125-openmpi-common_5.0.8-5_all.deb ... Unpacking openmpi-common (5.0.8-5) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../126-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../127-openmpi-bin_5.0.8-5_arm64.deb ... Unpacking openmpi-bin (5.0.8-5) ... Selecting previously unselected package libopenmpi-dev:arm64. Preparing to unpack .../128-libopenmpi-dev_5.0.8-5_arm64.deb ... Unpacking libopenmpi-dev:arm64 (5.0.8-5) ... Selecting previously unselected package libsprng2. Preparing to unpack .../129-libsprng2_2.0a-16_arm64.deb ... Unpacking libsprng2 (2.0a-16) ... Selecting previously unselected package libsprng2-dev. Preparing to unpack .../130-libsprng2-dev_2.0a-16_arm64.deb ... Unpacking libsprng2-dev (2.0a-16) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../131-mpi-default-dev_1.18_arm64.deb ... Unpacking mpi-default-dev (1.18) ... Selecting previously unselected package time. Preparing to unpack .../132-time_1.9-0.2+b1_arm64.deb ... Unpacking time (1.9-0.2+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../133-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libpciaccess0:arm64 (0.17-3+b3) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up time (1.9-0.2+b1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libboost1.83-dev:arm64 (1.83.0-4.2) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libcbor0.10:arm64 (0.10.2-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libedit2:arm64 (3.1-20250104-1) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libibumad3:arm64 (56.1-1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libibmad5:arm64 (56.1-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libz3-4:arm64 (4.13.3-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libhwloc15:arm64 (2.12.2-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libncursesw6:arm64 (6.5+20250216-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libltdl7:arm64 (2.5.4-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:arm64 (15.2.0-2) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up libnuma1:arm64 (2.0.19-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up ocl-icd-libopencl1:arm64 (2.3.3-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-9) ... Setting up libnl-3-200:arm64 (3.7.0-2) ... Setting up openmpi-common (5.0.8-5) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up cmake-data (4.1.1-1) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libfuse3-4:arm64 (3.17.4-1) ... Setting up libfido2-1:arm64 (1.16.0-2) ... Setting up libdrm-common (2.4.125-2) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up chrpath (0.18-1) ... Setting up libsprng2 (2.0a-16) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.3.0-5) ... Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-4) ... Setting up libtool (2.5.4-4) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:arm64 (2.0.19-1) ... Setting up libnl-route-3-200:arm64 (3.7.0-2) ... Setting up libxnvctrl0:arm64 (535.171.04-1+b2) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:arm64 (2.5.4-4) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:arm64 (1:17.0.6-22+b3) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up libdrm2:arm64 (2.4.125-2) ... Setting up libnl-3-dev:arm64 (3.7.0-2) ... Setting up groff-base (1.23.0-9) ... Setting up libsprng2-dev (2.0a-16) ... Setting up gfortran-14-aarch64-linux-gnu (14.3.0-5) ... Setting up libhwloc-dev:arm64 (2.12.2-1) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up gfortran-14 (14.3.0-5) ... Setting up libdrm-amdgpu1:arm64 (2.4.125-2) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libibverbs1:arm64 (56.1-1) ... Setting up ibverbs-providers:arm64 (56.1-1) ... Setting up openssh-client (1:10.0p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libhwloc-plugins:arm64 (2.12.2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnl-route-3-dev:arm64 (3.7.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up librdmacm1t64:arm64 (56.1-1) ... Setting up libhsakmt1:arm64 (6.2.4+ds-1) ... Setting up libfabric1:arm64 (2.1.0-1.1) ... Setting up libcurl4t64:arm64 (8.16.0~rc2-1) ... Setting up debhelper (13.26) ... Setting up libibverbs-dev:arm64 (56.1-1) ... Setting up libhsa-runtime64-1:arm64 (6.1.2-3) ... Setting up cmake (4.1.1-1) ... Setting up libamdhip64-5:arm64 (5.7.1-6) ... Setting up libucx0:arm64 (1.18.1+ds-2+b1) ... Setting up libopenmpi40:arm64 (5.0.8-5) ... Setting up openmpi-bin (5.0.8-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:arm64 (5.0.8-5) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up mpi-default-dev (1.18) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Fri, 29 Aug 2025 22:41:46 +0000 | +------------------------------------------------------------------------------+ E: dsc: arm64 not in arch list or does not match any arch wildcards: amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 -- skipping +------------------------------------------------------------------------------+ | Cleanup Fri, 29 Aug 2025 22:41:48 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: dsc: arm64 not in arch list or does not match any arch wildcards: amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 -- skipping +------------------------------------------------------------------------------+ | Summary Fri, 29 Aug 2025 22:41:51 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: binary Build-Space: n/a Build-Time: 0 Distribution: sid Fail-Stage: arch-check Host Architecture: arm64 Install-Time: 39 Job: /tmp/debusine-fetch-exec-upload-w7yqwpva/iqtree_2.0.7+dfsg-1.dsc Machine Architecture: arm64 Package: iqtree Package-Time: 0 Source-Version: 2.0.7+dfsg-1 Space: n/a Status: skipped Version: 2.0.7+dfsg-1 -------------------------------------------------------------------------------- Finished at 2025-08-29T22:40:30Z Build needed 00:00:00, no disk space ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2394219/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/153182/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
