Source: lambda-align Version: 1.0.3-6 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, lambda-align failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz f7950e95ae15131b6a3ef5c0aac6a65e30b681de 8076 lambda-align_1.0.3-6.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 273eb80db8d211a4962c9293da44c3c306f9285cac40bc16214792ac783c8aaf 8076 lambda-align_1.0.3-6.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz c3059711cc55cec3d40ede08e067c36a 8076 lambda-align_1.0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAl4+1N0ACgkQUfhKj+zK fgn38wf/eQZYcur2B80xsxni8nDV4Gllx537JzWZrKZjljPw5jJ43NPo0q6eukyc E1PSuSc7ZAsw9socn3OdAHODECCS2qaFxhUqTJHXnPsp2T8GnbW1Sxo6suhCA6+4 8xF//SRM3nETO+lSJbxHlWDlQ9Qm86D6nHsh7JvYkEfdA2bdnJBVxU/TcATSjVHs e+3zbRN2E0aJfLQ6nN2TNyoe2cbeZ7kY5sDi+uuG77ln2E1FtPNdqTY7T2Ydn8en m/LktqBcyeMs+UuWLYLdUt/gXFS21IpEm15JbRDcK6uoQCg1CctKyWVPuXuXYHwG EvH+mavYPgSZDciQ/wysdXzHa9aWjA== =pD29 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-6.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in /build/reproducible-path/lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss <[email protected]> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Error at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.5 has been removed from CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway. -- Configuring incomplete, errors occurred! cd build && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /build/reproducible-path/lambda-align-1.0.3/build # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //No help, variable specified on the command line. CMAKE_BUILD_TYPE:UNINITIALIZED=Release //No help, variable specified on the command line. CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //Value Computed by CMake. CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles/pkgRedirects //No help, variable specified on the command line. CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //No help, variable specified on the command line. CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr //No help, variable specified on the command line. CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //No help, variable specified on the command line. CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON //No help, variable specified on the command line. FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON //No help, variable specified on the command line. LAMBDA_MMAPPED_DB:UNINITIALIZED=ON //No help, variable specified on the command line. LAMBDA_NATIVE_BUILD:UNINITIALIZED=OFF ######################## # INTERNAL cache entries ######################## //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/lambda-align-1.0.3/build //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=1 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=1 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=/usr/bin/cmake //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest //Name of external makefile project generator. CMAKE_EXTRA_GENERATOR:INTERNAL= //Name of generator. CMAKE_GENERATOR:INTERNAL=Unix Makefiles //Generator instance identifier. CMAKE_GENERATOR_INSTANCE:INTERNAL= //Name of generator platform. CMAKE_GENERATOR_PLATFORM:INTERNAL= //Name of generator toolset. CMAKE_GENERATOR_TOOLSET:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/lambda-align-1.0.3 //Name of CMakeLists files to read CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 dh_auto_configure: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. returned exit code 1 make[1]: *** [debian/rules:28: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' make: *** [debian/rules:7: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-30T03:06:37Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2398835/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/153648/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
