Source: macromoleculebuilder Version: 4.0.0+dfsg-5 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, macromoleculebuilder failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_DLLTOOL CMAKE_DLLTOOL-ADVANCED:INTERNAL=1 //Executable file format CMAKE_EXECUTABLE_FORMAT:INTERNAL=ELF //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS CMAKE_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_MINSIZEREL CMAKE_EXE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_EXPORT_COMPILE_COMMANDS CMAKE_EXPORT_COMPILE_COMMANDS-ADVANCED:INTERNAL=1 //Name of external makefile project generator. 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CMAKE_GENERATOR_TOOLSET:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg //ADVANCED property for variable: CMAKE_INSTALL_BINDIR CMAKE_INSTALL_BINDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_DATADIR CMAKE_INSTALL_DATADIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_DATAROOTDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_DOCDIR CMAKE_INSTALL_DOCDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_INCLUDEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_INFODIR CMAKE_INSTALL_INFODIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_LIBEXECDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_LOCALEDIR CMAKE_INSTALL_LOCALEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_LOCALSTATEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_MANDIR CMAKE_INSTALL_MANDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_OLDINCLUDEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_RUNSTATEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SBINDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_SHAREDSTATEDIR CMAKE_INSTALL_SHAREDSTATEDIR-ADVANCED:INTERNAL=1 //Install .so files without execute permission. 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CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_RPATH CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS CMAKE_STATIC_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_DEBUG CMAKE_STATIC_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELEASE CMAKE_STATIC_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STRIP CMAKE_STRIP-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_TAPI CMAKE_TAPI-ADVANCED:INTERNAL=1 //uname command CMAKE_UNAME:INTERNAL=/usr/bin/uname //ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1 //Details about finding OpenMM FIND_PACKAGE_MESSAGE_DETAILS_OpenMM:INTERNAL=[/usr/include][/usr/lib/aarch64-linux-gnu/libOpenMM.so][v()] //Details about finding ZLIB FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[/usr/lib/aarch64-linux-gnu/libz.so][/usr/include][ ][v1.3.1()] //ADVANCED property for variable: OpenMM_DEBUG_LIBRARY OpenMM_DEBUG_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMM_INCLUDE_DIR OpenMM_INCLUDE_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMM_LIBRARIES OpenMM_LIBRARIES-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMM_LIBRARY OpenMM_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMM_STATIC_LIBRARY OpenMM_STATIC_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: ZLIB_INCLUDE_DIR ZLIB_INCLUDE_DIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: ZLIB_LIBRARY_DEBUG ZLIB_LIBRARY_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: ZLIB_LIBRARY_RELEASE ZLIB_LIBRARY_RELEASE-ADVANCED:INTERNAL=1 //CMAKE_INSTALL_PREFIX during last run _GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DENABLE_LEPTON=OFF -DGEMMI_DIR=/usr -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr "-DCMAKE_CXX_FLAGS=-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0" .. returned exit code 1 make[1]: *** [debian/rules:12: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg' make: *** [debian/rules:9: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-30T06:15:30Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2403637/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/154048/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
