Source: maffilter Version: 1.3.1+dfsg-6 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, maffilter failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] Architecture: any all Version: 1.3.1+dfsg-6 Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, Julien Dutheil <[email protected]>, Pranav Ballaney <[email protected]> Homepage: https://jydu.github.io/maffilter/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/maffilter Vcs-Git: https://salsa.debian.org/med-team/maffilter.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev Package-List: maffilter deb science optional arch=any maffilter-examples deb science optional arch=all Checksums-Sha1: 52fb7acc20ef914ef4e44676b316cf3753c46c9b 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 38d6a27b6cb4736f809d80ef7f0c00ea2fe31427 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Checksums-Sha256: 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 99b7f757063096a6d5c51725e8da009e89a93db24fb2b8bec744df818abcfac6 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Files: 3548c76d884bacc4ce267d70f304435e 78668340 maffilter_1.3.1+dfsg.orig.tar.xz b33270bbd567a7c6555149285d1215a9 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYCrHwACgkQPCZ2P2xn 5uIpFhAArz+NErkZNwZCfY0Un+O+osPVGHYlzl9B+Ei7uLqrLQS9Gu2QYjcEH2R8 Ea0y17CIjIlTpDrd1VyaIVbmFE0H7RJSJu4MjNF6rkRFOfith+7gXvQqdLa5mAjC e8Yb2aB7hztTz4tz9nN2pfktzAfcGf9y0ryrSTYrrGx9455Sv/OVLL2PaagUzdyH dyGC/8eIGZrXRDgIoXegqoWJgzFgpfpnpf7MbOrb/15FmlbJ1vg2Kmyi9rviz8tF NdqGbkRIIMWxLJGWzIKEDq6gR2aFkjqemaqaeBObx/iONjwjTKHXP1UDhU8GXYNX C2Z0kVVzNg39Z8i13GqtCRLCfhz7pY79u8LOZfu7Ido5xkD9Qcmpb7pZJxTG4ikm PsZ0mN9o5rPmHHFGAh6PGRJ6NlzqZYq3CAPYHdIQbnZgx9SyyPKStBpMzV7HKpLp VbD0z//i8dX5xZLNV1GemeIqO7g0mjYBlYLtbna70PLz7IMz+djXYOCQE1ZLbnhD dIFjD1xL3keGDJIo/OuwnkPClp/2rhqBCpgZDhz4kXnhykEJU+ENb4DtgVSsZDyH 0whfX4BURxge53wYamh90oUtVV097O+JzPlL2EmOlK6Mr+I4dqyTRgwmTODDqtzp Hyq9dT7zOgbNp1c5kAmF/ct6eZAsoi6+0NpBFhvedJBzw+YxD3U= =UcyI -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./maffilter_1.3.1+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting maffilter in /build/reproducible-path/maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe <[email protected]> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Error at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.5 has been removed from CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway. -- Configuring incomplete, errors occurred! cd obj-aarch64-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-aarch64-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //No help, variable specified on the command line. CMAKE_BUILD_TYPE:UNINITIALIZED=None //No help, variable specified on the command line. CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //Value Computed by CMake. CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/maffilter-1.3.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles/pkgRedirects //No help, variable specified on the command line. CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //No help, variable specified on the command line. CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr //No help, variable specified on the command line. CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //No help, variable specified on the command line. CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON //No help, variable specified on the command line. FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON ######################## # INTERNAL cache entries ######################## //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/maffilter-1.3.1+dfsg/obj-aarch64-linux-gnu //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=1 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=1 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=/usr/bin/cmake //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest //Name of external makefile project generator. CMAKE_EXTRA_GENERATOR:INTERNAL= //Name of generator. CMAKE_GENERATOR:INTERNAL=Unix Makefiles //Generator instance identifier. CMAKE_GENERATOR_INSTANCE:INTERNAL= //Name of generator platform. CMAKE_GENERATOR_PLATFORM:INTERNAL= //Name of generator toolset. CMAKE_GENERATOR_TOOLSET:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/maffilter-1.3.1+dfsg //Name of CMakeLists files to read CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. returned exit code 1 make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-30T06:15:34Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2403639/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/154050/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
