Package: src:toppic Version: 1.5.3+dfsg1-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:toppic, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' rm -f debian/topfd.1 rm -f debian/toppic.1 rm -f debian/topmg.1 rm -f debian/topdiff.1 dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ [... snipped ...] AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topconvert.cpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topconvert_autogen/timestamp /usr/bin/cmake -E touch /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 1%] Built target topmerge_gui_autogen [ 1%] Built target topconvert_autogen make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 1%] Automatic RCC for src/gui/topfd/icon.qrc Dependencies file "topfd_autogen/deps" is newer than depends file "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd.dir/compiler_depend.internal". /usr/bin/cmake -E cmake_autorcc /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release Consolidate compiler generated dependencies of target topfd make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /<<PKGBUILDDIR>>/src/gui/topfd/icon.qrc make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/DependInfo.cmake "--color=" [ 1%] Building CXX object CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] fd_autogen/mocs_compilation.cpp Dependencies file "topfd_gui_autogen/deps" is newer than depends file "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topfd_gui make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] UILDDIR>>/src/console/topfd.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] ui_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] >/src/gui/topfd/threadtopfd.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] /src/console/topfd_argument.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] R>>/src/gui/topfd/topfd_gui.cpp /<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp: In function âint main(int, char**)â: /<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp:40:43: warning: âconst QRect QDesktopWidget::availableGeometry(int) constâ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp:18: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] >/src/gui/topfd/topfddialog.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] src/topfd/common/topfd_para.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] /topfd/common/topfd_process.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] src/topfd/common/topfd_para.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] /topfd/common/topfd_process.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] /topfd/deconv/deconv_one_sp.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] /topfd/deconv/deconv_one_sp.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] topfd/deconv/deconv_process.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] topfd/deconv/deconv_process.cpp In file included from /<<PKGBUILDDIR>>/src/topfd/msreader/pw_ms_reader.hpp:25, from /<<PKGBUILDDIR>>/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.hpp:25, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:37: /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:75:24: error: redefinition of âstd::string boost::filesystem::extension(const path&)â 75 | inline std::string extension(const path& p) | ^~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:17: /usr/include/boost/filesystem/convenience.hpp:29:20: note: âstd::string boost::filesystem::extension(const path&)â previously defined here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:80:24: error: redefinition of âstd::string boost::filesystem::basename(const path&)â 80 | inline std::string basename(const path& p) | ^~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: âstd::string boost::filesystem::basename(const path&)â previously defined here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:85:17: error: redefinition of âboost::filesystem::path boost::filesystem::change_extension(const path&, const path&)â 85 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:41:13: note: âboost::filesystem::path boost::filesystem::change_extension(const path&, const path&)â previously defined here 41 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ make[3]: *** [CMakeFiles/topfd.dir/build.make:173: CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:153: CMakeFiles/topfd.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] DIR>>/src/topfd/dp/co_table.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] GBUILDDIR>>/src/topfd/dp/dp.cpp In file included from /<<PKGBUILDDIR>>/src/topfd/msreader/pw_ms_reader.hpp:25, from /<<PKGBUILDDIR>>/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.hpp:25, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:37: /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:75:24: error: redefinition of âstd::string boost::filesystem::extension(const path&)â 75 | inline std::string extension(const path& p) | ^~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:17: /usr/include/boost/filesystem/convenience.hpp:29:20: note: âstd::string boost::filesystem::extension(const path&)â previously defined here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:80:24: error: redefinition of âstd::string boost::filesystem::basename(const path&)â 80 | inline std::string basename(const path& p) | ^~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: âstd::string boost::filesystem::basename(const path&)â previously defined here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:85:17: error: redefinition of âboost::filesystem::path boost::filesystem::change_extension(const path&, const path&)â 85 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:41:13: note: âboost::filesystem::path boost::filesystem::change_extension(const path&, const path&)â previously defined here 41 | inline path change_extension(const path& p, const path& new_extension) | ^~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o /usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P [too-long-redacted] UILDDIR>>/src/topfd/dp/dp_a.cpp make[3]: *** [CMakeFiles/topfd_gui.dir/build.make:195: CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:186: CMakeFiles/topfd_gui.dir/all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:139: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:10: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
