Package: src:python-xarray Version: 2025.08.0-3 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-xarray, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-xarray.substvars debian/python-xarray-doc.substvars debian/files rm -fr -- debian/python3-xarray/ debian/tmp/ debian/python-xarray-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ [... snipped ...] ........................................................................ 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[100%] =================================== FAILURES =================================== __________________ test_mypy_pipe_function_unexpected_keyword __________________ [gw1] linux -- Python 3.13.7 /usr/bin/python3.13 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_dataarray_typing.yml:117: E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output: E Actual: E ../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/common: note: "pipe" of "DataWithCoords" defined here (diff) E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithCoords" [call-arg] (diff) E Expected: E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithCoords" [call-arg] (diff) E Alignment of first line difference: E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithC... E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho... E ^ __________________ test_mypy_pipe_function_unexpected_keyword __________________ [gw1] linux -- Python 3.13.7 /usr/bin/python3.13 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_dataset_typing.yml:117: E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output: E Actual: E ../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/common: note: "pipe" of "DataWithCoords" defined here (diff) E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithCoords" [call-arg] (diff) E Expected: E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithCoords" [call-arg] (diff) E Alignment of first line difference: E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataWithC... E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho... E ^ __________________ test_mypy_pipe_function_unexpected_keyword __________________ [gw1] linux -- Python 3.13.7 /usr/bin/python3.13 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_datatree_typing.yml:117: E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output: E Actual: E ../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/datatree: note: "pipe" of "DataTree" defined here (diff) E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataTree" [call-arg] (diff) E Expected: E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataTree" [call-arg] (diff) E Alignment of first line difference: E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataTree"... E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho... E ^ =============================== warnings summary =============================== xarray/tests/test_conventions.py::TestEncodeCFVariable::test_missing_fillvalue /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/duck_array_ops.py:250: RuntimeWarning: invalid value encountered in cast return data.astype(dtype, **kwargs) xarray/tests/test_dask.py: 12 warnings xarray/tests/test_units.py: 10 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:442: RuntimeWarning: invalid value encountered in cast multiarray.copyto(res, fill_value, casting='unsafe') xarray/tests/test_duck_array_wrapping.py::TestDataArrayMethods::test_astype[pint] /usr/lib/python3/dist-packages/pint/facets/numpy/quantity.py:88: RuntimeWarning: invalid value encountered in cast value = func(*args, **kwargs) xarray/tests/test_duck_array_ops.py: 16 warnings /usr/lib/python3/dist-packages/dask/array/core.py:5083: RuntimeWarning: overflow encountered in scalar add result = function(*args, **kwargs) xarray/tests/test_duck_array_ops.py::test_cftime_datetime_mean[True] /usr/lib/python3/dist-packages/dask/array/core.py:5083: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. result = function(*args, **kwargs) xarray/tests/test_strategies.py::TestReduction::test_mean xarray/tests/test_strategies.py::TestReduction::test_mean /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:86: RuntimeWarning: invalid value encountered in reduce return ufunc.reduce(obj, axis, dtype, out, **passkwargs) xarray/tests/test_strategies.py::TestReduction::test_mean xarray/tests/test_strategies.py::TestReduction::test_mean /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_strategies.py:278: RuntimeWarning: Mean of empty slice expected = np.nanmean(var.data, axis=reduction_axes) xarray/tests/test_units.py::TestDataArray::test_missing_value_filling[int64-method_ffill] xarray/tests/test_units.py::TestDataArray::test_missing_value_filling[int64-method_bfill] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2784: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py: 15 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2821: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataArray::test_dropna[int64] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2849: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataArray::test_isin[int64-no_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-dimensionless] xarray/tests/test_units.py::TestDataArray::test_isin[int64-incompatible_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-compatible_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-identical_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2874: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataArray::test_isin[int64-no_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-dimensionless] xarray/tests/test_units.py::TestDataArray::test_isin[int64-incompatible_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-compatible_unit] xarray/tests/test_units.py::TestDataArray::test_isin[int64-identical_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2879: RuntimeWarning: invalid value encountered in cast raw_values = np.array([1.4, np.nan, 2.3]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_ffill] xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_bfill] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4270: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_ffill] xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_bfill] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4274: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) xarray/tests/test_units.py: 15 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4313: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py: 15 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4317: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_dropna[int64] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4343: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_dropna[int64] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4347: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless] xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4371: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless] xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4375: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless] xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit] xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4380: RuntimeWarning: invalid value encountered in cast raw_values = np.array([1.4, np.nan, 2.3]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_interpolate_na[int64] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4456: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_interpolate_na[int64] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4460: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-no_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-dimensionless] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-incompatible_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-compatible_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-same_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4505: RuntimeWarning: invalid value encountered in cast np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) * data_unit xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-no_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-dimensionless] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-incompatible_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-compatible_unit] xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-same_unit] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4508: RuntimeWarning: invalid value encountered in cast np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) * data_unit xarray/tests/test_weighted.py::test_weighted_quantile_3D[True-True-q1-a] xarray/tests/test_weighted.py::test_weighted_quantile_3D[True-True-q1-b] /usr/lib/python3/dist-packages/numpy/lib/_nanfunctions_impl.py:1620: RuntimeWarning: All-NaN slice encountered return fnb._ureduce(a, -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED xarray/tests/test_dataarray_typing.yml::test_mypy_pipe_function_unexpected_keyword FAILED xarray/tests/test_dataset_typing.yml::test_mypy_pipe_function_unexpected_keyword FAILED xarray/tests/test_datatree_typing.yml::test_mypy_pipe_function_unexpected_keyword = 3 failed, 19104 passed, 2638 skipped, 199 xfailed, 98 xpassed, 138 warnings in 168.67s (0:02:48) = E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build; python3.13 -m pytest -n2 --deselect=xarray/tests/test_weighted.py::test_weighted_operations_keep_attr --deselect=xarray/tests/test_variable.py::TestVariable::test_reduce_keepdims --deselect=xarray/tests/test_backends.py::test_zarr_region_chunk_partial_offset --deselect=xarray/tests/test_backends.py::test_chunk_encoding_with_dask --pyargs xarray rm -fr -- /tmp/dh-xdg-rundir-KINz0UmW dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:52: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 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