Your message dated Tue, 16 Sep 2025 21:33:49 +0000
with message-id <[email protected]>
and subject line Bug#1096300: fixed in altree 1.3.2-3
has caused the Debian Bug report #1096300,
regarding altree: ftbfs with GCC-15
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1096300: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096300
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:altree
Version: 1.3.2-2
Severity: important
Tags: sid forky
User: [email protected]
Usertags: ftbfs-gcc-15
[This bug is NOT targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.
The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/altree_1.3.2-2_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html
[...]
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
chmod 644 "CUtils.bs"
x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE
-DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/altree-1.3.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-DVERSION=\"\" -DXS_VERSION=\"\" -fPIC
"-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" mt19937ar.c
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs
../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE
-DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/altree-1.3.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-DVERSION=\"\" -DXS_VERSION=\"\" -fPIC
"-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" myrand.c
x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE
-DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/altree-1.3.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-DVERSION=\"\" -DXS_VERSION=\"\" -fPIC
"-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" resampling.c
x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE
-DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/altree-1.3.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-DVERSION=\"\" -DXS_VERSION=\"\" -fPIC
"-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" rhyper.c
chisq.c: In function ‘pochisq’:
chisq.c:77:1: warning: old-style function definition [-Wold-style-definition]
77 | pochisq (x, df)
| ^~~~~~~
chisq.c:80:8: error: number of arguments doesn’t match prototype
80 | {
| ^
chisq.c:26:8: error: prototype declaration
26 | double pochisq ();
| ^~~~~~~
chisq.c:83:16: error: conflicting types for ‘poz’; have ‘double(void)’
83 | double poz (); /* computes probability of normal z score */
| ^~~
In file included from chisq.c:15:
z.h:4:8: note: previous declaration of ‘poz’ with type ‘double(double)’
4 | double poz (double z);
| ^~~
chisq.c:93:31: error: too many arguments to function ‘poz’; expected 0, have 1
93 | s = (even ? y : (2.0 * poz (-sqrt (x))));
| ^~~ ~~~~~~~~~
chisq.c:83:16: note: declared here
83 | double poz (); /* computes probability of normal z score */
| ^~~
chisq.c: In function ‘critchi’:
chisq.c:129:1: warning: old-style function definition [-Wold-style-definition]
129 | critchi (p, df)
| ^~~~~~~
chisq.c:132:8: error: number of arguments doesn’t match prototype
132 | {
| ^
chisq.c:27:8: error: prototype declaration
27 | double critchi ();
| ^~~~~~~
chisq.c:145:20: error: too many arguments to function ‘pochisq’; expected 0,
have 2
145 | if (pochisq (chisqval, df) < p)
| ^~~~~~~ ~~~~~~~~
chisq.c:77:1: note: declared here
77 | pochisq (x, df)
| ^~~~~~~
make[4]: *** [Makefile:343: chisq.o] Error 1
make[4]: *** Waiting for unfinished jobs....
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
mv CUtils.xsc CUtils.c
x86_64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE
-DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/altree-1.3.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC
"-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" CUtils.c
In function ‘pval_min’,
inlined from ‘double_permutation’ at double_permutation.c:182:19:
double_permutation.c:125:20: warning: ‘*(datatype_t *)local’ may be used
uninitialized [-Wmaybe-uninitialized]
125 | datatype_t ret=rep[0];
| ^~~
make[4]: Leaving directory
'/build/reproducible-path/altree-1.3.2/CUtils/c_sources'
make[3]: *** [Makefile:1113: c_sources/libaltree-cutils.a] Error 2
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils'
make[2]: *** [Makefile:549: subdirs] Error 2
make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2'
dh_auto_build: error: make -j8 returned exit code 2
make[1]: *** [debian/rules:16: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2'
make: *** [debian/rules:8: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: altree
Source-Version: 1.3.2-3
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
altree, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated altree package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 16 Sep 2025 22:55:54 +0200
Source: altree
Architecture: source
Version: 1.3.2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1096300 1102872
Changes:
altree (1.3.2-3) unstable; urgency=medium
.
* Team upload.
* gcc-15.patch: new: fix ftbfs with GCC-15. (Closes: #1096300)
* d/control: build depends on perl-xs-dev. (Closes: #1102872)
* d/control: adjust build-dependencies for cross-compilation.
* d/rules: isolate documentation specific rules.
* typo.patch: new: fix "allows to" typo caught by lintian.
* d/rules: convert various Perl scripts to UTF-8.
* d/control: declare compliance to standards version 4.7.2.
* d/watch: bump to v5 and git mode.
The gitlab instance looks to be running on top of an older version
which is not yet supported by uscan's gitlab template. Therefore,
let's move to plain git ls-remote itself.
Checksums-Sha1:
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809cd557d1622525037a7079753729f4b51370a2 8516 altree_1.3.2-3.debian.tar.xz
Checksums-Sha256:
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6f481b8d644c94f171aa1fc4a1cb5c91437f41619562bbbe9395aad8f9467d9b 8516
altree_1.3.2-3.debian.tar.xz
Files:
a478ce174d7d62c9f57bf107fe12f733 2535 science optional altree_1.3.2-3.dsc
001cf34d65fddfd986562169e704d160 8516 science optional
altree_1.3.2-3.debian.tar.xz
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