Source: r-cran-pkgdown Version: 2.1.1-2 Severity: serious X-Debbugs-CC: [email protected] Tags: sid trixie User: [email protected] Usertags: needs-update Control: affects -1 src:node-jquery
Dear maintainer(s),With a recent upload of node-jquery the autopkgtest of r-cran-pkgdown fails in testing when that autopkgtest is run with the binary packages of node-jquery from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
node-jquery from testing 3.7.1+dfsg+~3.5.33-1
r-cran-pkgdown from testing 2.1.1-2
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of node-jquery to
testing [1]. Of course, node-jquery shouldn't just break your
autopkgtest (or even worse, your package), but it seems to me that the
change in node-jquery was intended and your package needs to update to
the new situation.
If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from node-jquery should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=node-jquery https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-pkgdown/64413608/log.gz 63s BEGIN TEST testthat.R 63s 63s R version 4.5.1 (2025-06-13) -- "Great Square Root" 63s Copyright (C) 2025 The R Foundation for Statistical Computing 63s Platform: x86_64-pc-linux-gnu 63s 63s R is free software and comes with ABSOLUTELY NO WARRANTY. 63s You are welcome to redistribute it under certain conditions. 63s Type 'license()' or 'licence()' for distribution details. 63s 63s R is a collaborative project with many contributors. 63s Type 'contributors()' for more information and 63s 'citation()' on how to cite R or R packages in publications. 63s 63s Type 'demo()' for some demos, 'help()' for on-line help, or 63s 'help.start()' for an HTML browser interface to help. 63s Type 'q()' to quit R. 63s 63s > library(testthat) 63s > library(pkgdown) 64s > 64s > test_check("pkgdown") 64s Starting 2 test processes 110s [ FAIL 13 | WARN 3 | SKIP 132 | PASS 661 ]110s 110s ══ Skipped tests (132) ═════════════════════════════════════════════════════════ 112s • diffviewer is not packaged in Debian (1): 'test-build-article.R:325:3' 112s • On CRAN (123): 'test-build-reference.R:3:3', 'test-build-reference.R:104:3',
112s 'test-build-articles.R:14:3', 'test-build-articles.R:29:3', 112s 'test-build-articles.R:57:3', 'test-build-articles.R:79:3', 112s 'test-build-favicons.R:4:3', 'test-build-favicons.R:16:3', 112s 'test-build-footer.R:12:3', 'test-build-footer.R:68:3', 112s 'test-build-github.R:5:3', 'test-build-home-authors.R:16:3', 112s 'test-build-home-authors.R:29:3', 'test-build-home-authors.R:90:3', 112s 'test-build-home-authors.R:96:3', 'test-build-home-authors.R:198:3', 112s 'test-build-home-community.R:11:3', 'test-build-home-index.R:4:3', 112s 'test-build-home-index.R:39:3', 'test-build-home-index.R:58:3', 112s 'test-build-home-index.R:86:3', 'test-build-home-index.R:107:3', 112s 'test-build-home-index.R:116:3', 'test-build-home-index.R:125:3', 112s 'test-build-home-index.R:136:3', 'test-build-home-index.R:161:3', 112s 'test-build-news.R:16:3', 'test-build-news.R:52:3', 112s 'test-build-news.R:105:3', 'test-build-news.R:110:3', 112s 'test-build-news.R:115:3', 'test-build-news.R:187:3', 112s 'test-build-news.R:206:3', 'test-build-news.R:220:3', 112s 'test-build-news.R:234:3', 'test-build-news.R:246:3', 112s 'test-build-redirects.R:10:3', 'test-build-redirects.R:27:3', 112s 'test-build-article.R:47:3', 'test-build-article.R:118:3', 112s 'test-build-article.R:175:3', 'test-build-article.R:204:3', 112s 'test-build-article.R:229:3', 'test-build-reference-index.R:10:3',112s 'test-build-reference-index.R:60:3', 'test-build-reference-index.R:74:3', 112s 'test-build-reference-index.R:115:3', 'test-build-reference-index.R:128:3',
112s 'test-build-search-docs.R:39:3', 'test-build-search-docs.R:47:3', 112s 'test-check-built.R:7:3', 'test-config.R:11:3', 'test-config.R:16:3', 112s 'test-config.R:35:3', 'test-check.R:9:3', 'test-check.R:20:3', 112s 'test-check.R:31:3', 'test-check.R:40:3', 'test-check.R:51:3',112s 'test-check.R:68:3', 'test-external-deps.R:4:3', 'test-development.R:54:3', 112s 'test-highlight.R:14:3', 'test-highlight.R:28:3', 'test-highlight.R:56:3', 112s 'test-markdown.R:24:3', 'test-markdown.R:61:3', 'test-navbar-menu.R:10:3',
112s 'test-navbar-menu.R:20:3', 'test-navbar-menu.R:28:3', 112s 'test-navbar-menu.R:50:3', 'test-navbar-menu.R:80:3', 112s 'test-navbar-menu.R:84:3', 'test-navbar.R:3:3', 'test-navbar.R:15:3', 112s 'test-navbar.R:25:3', 'test-navbar.R:88:3', 'test-navbar.R:103:3', 112s 'test-navbar.R:124:4', 'test-navbar.R:133:3', 'test-navbar.R:172:3', 112s 'test-init.R:3:3', 'test-init.R:57:3', 'test-preview.R:4:3', 112s 'test-package.R:2:3', 'test-package.R:21:3', 'test-package.R:27:3',112s 'test-package.R:92:3', 'test-rd-example.R:112:3', 'test-rd-html.R:7:3',
112s 'test-rd-html.R:32:3', 'test-rd-html.R:36:3', 'test-rd-html.R:53:3',112s 'test-rd-html.R:293:3', 'test-rd-html.R:365:3', 'test-rd-html.R:373:3',
112s 'test-rd-html.R:384:3', 'test-rd-html.R:394:3', 'test-render.R:6:3', 112s 'test-render.R:48:3', 'test-repo.R:53:3', 'test-theme.R:5:3', 112s 'test-theme.R:36:3', 'test-topics-external.R:2:3', 112s 'test-topics-external.R:10:3', 'test-templates.R:121:3', 112s 'test-templates.R:128:3', 'test-templates.R:175:4', 112s 'test-tweak-homepage.R:38:3', 'test-tweak-homepage.R:59:3', 112s 'test-tweak-homepage.R:71:3', 'test-tweak-tabset.R:22:3', 112s 'test-tweak-tags.R:61:3', 'test-tweak-tags.R:177:3',112s 'test-tweak-tags.R:268:3', 'test-topics.R:18:3', 'test-topics.R:35:3',
112s 'test-topics.R:70:3', 'test-topics.R:157:3', 'test-topics.R:169:3', 112s 'test-utils-fs.R:2:3', 'test-utils-fs.R:9:3', 'test-usage.R:24:3'112s • quarto package is not installed (8): 'test-build-quarto-articles.R:2:3', 112s 'test-build-quarto-articles.R:15:3', 'test-build-quarto-articles.R:33:3', 112s 'test-build-quarto-articles.R:48:3', 'test-build-quarto-articles.R:64:3', 112s 'test-build-quarto-articles.R:76:3', 'test-build-quarto-articles.R:93:3',
112s 'test-figure.R:3:3'112s 112s ══ Failed tests ════════════════════════════════════════════════════════════════ 113s ── Error ('test-build-article.R:20:3'): can override html_document() options ─── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:20:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:40:3'): can set width ────────────────────────── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:40:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:62:3'): BS5 article laid out correctly with and without TOC ── 113s Error in `build_article("toc-true", pkg)`: ! Failed to render 'vignettes/toc-true.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(...) at test-build-article.R:62:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("toc-true", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:80:3'): BS5 article gets correctly activated navbar ── 113s Error in `build_article("article", pkg)`: ! Failed to render 'vignettes/article.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(...) at test-build-article.R:80:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("article", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:94:3'): titles are escaped when needed ───────── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:94:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:106:3'): output is reproducible by default, i.e. 'seed' is respected ── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:106:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:127:3'): can control math mode ───────────────── 113s Error in `build_article("math", pkg)`: ! Failed to render 'vignettes/math.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("math", pkg)) at test-build-article.R:127:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("math", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:167:3'): build_article styles ANSI escapes ───── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:167:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...)113s ── Error ('test-build-article.R:223:3'): build_article copies image files in subdirectories ── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("test", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)113s 6. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond) 113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 10. └─cli::cli_abort(...) 113s 11. └─rlang::abort(...)113s ── Error ('test-build-article.R:276:3'): warns about missing images ──────────── 113s Error in `build_article("kitten", pkg)`: ! Failed to render 'vignettes/kitten.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("kitten", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)113s 6. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond) 113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 10. └─cli::cli_abort(...) 113s 11. └─rlang::abort(...)113s ── Failure ('test-build-article.R:289:3'): spaces in sorce paths do work ─────── 113s Expected `suppressMessages(build_article("kitten", as_pkgdown(pkg1)))` to run without any errors.
113s i Actually got a <rlang_error> with text: 113s ! Failed to render 'vignettes/kitten.Rmd'. 113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1 113s ── Error ('test-build-article.R:298:3'): warns about missing alt-text ────────── 113s Error in `build_article("kitten", pkg)`: ! Failed to render 'vignettes/kitten.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("kitten", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)113s 6. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond) 113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 10. └─cli::cli_abort(...) 113s 11. └─rlang::abort(...)113s ── Error ('test-build-article.R:318:3'): pkgdown deps are included only once in articles ── 113s Error in `build_article("test", pkg)`: ! Failed to render 'vignettes/test.Rmd'.
113s Caused by error:113s ! path for html_dependency not found: /usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace: 113s ▆113s 1. ├─base::suppressMessages(path <- build_article("test", pkg)) at test-build-article.R:318:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)113s 8. │ └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond) 113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`) 113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call) 113s 12. └─cli::cli_abort(...) 113s 13. └─rlang::abort(...) 113s 113s [ FAIL 13 | WARN 3 | SKIP 132 | PASS 661 ] 113s Error: Test failures 114s Execution halted 114s autopkgtest [23:08:31]: test run-unit-test
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