Source: ncbi-blast+ Version: 2.17.0+ds-1 Severity: serious Tags: ftbfs patch X-Debbugs-Cc: Aaron M. Ucko <[email protected]>
https://buildd.debian.org/status/logs.php?pkg=ncbi-blast%2B&arch=armhf ... cc1: error: ‘-mfloat-abi=hard’: selected architecture lacks an FPU make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:111: crc32.o] Error 1 ... /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -fPIC -march=armv8-a+crc -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/crc32.c -o crc32.o ... This is fixed with the attached patch. In a related note: ncbi-blast+ (2.17.0+ds-2) unstable; urgency=medium * debian/control: - Additionally build-depend on libsimde-dev. - Require CRC support on ARM per upstream. * debian/patches/zcf-simde-crc32c (new): Replace Cloudflare deflate.c's fallbackless architecture-dependent code with a SIMDE invocation that amounts to the same thing on supported architectures and to a portable fallback elsewhere. -- Aaron M. Ucko <[email protected]> Wed, 01 Oct 2025 14:43:25 -0400 The SIMDE invocation replaces the direct usage of CRC, which makes the armv8crc-support dependency unnecessary. Depending on armhf on what is higher even than the arm64 baseline would make little sense in any case.
Description: Don't use -march=armv8-a+crc on arm Author: Adrian Bunk <[email protected]> --- ncbi-blast+-2.17.0+ds.orig/c++/src/util/compress/zlib_cloudflare/Makefile.zlib_cf.lib.unix +++ ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/Makefile.zlib_cf.lib.unix @@ -1,7 +1,7 @@ # $Id: Makefile.zlib_cf.lib.unix 677587 2024-01-18 20:07:53Z ivanov $ -ifneq "" "$(findstring --arm,$(signature))$(findstring --aarch64,$(signature))" - crc32.o: CFLAGS += -march=armv8-a+crc - deflate.o: CFLAGS += -march=armv8-a+crc -endif +#ifneq "" "$(findstring --arm,$(signature))$(findstring --aarch64,$(signature))" +# crc32.o: CFLAGS += -march=armv8-a+crc +# deflate.o: CFLAGS += -march=armv8-a+crc +#endif
