Package: src:pynx Version: 2025.1-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202510/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:pynx, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pynx.substvars debian/python3-pynx.substvars debian/python-pynx-doc.substvars debian/files rm -fr -- debian/pynx/ debian/tmp/ debian/python3-pynx/ debian/python-pynx-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ [... snipped ...] adding 'pynx/ptycho/runner/__init__.py' adding 'pynx/ptycho/runner/cristal.py' adding 'pynx/ptycho/runner/cxi.py' adding 'pynx/ptycho/runner/hermes.py' adding 'pynx/ptycho/runner/id01.py' adding 'pynx/ptycho/runner/id13.py' adding 'pynx/ptycho/runner/id16a.py' adding 'pynx/ptycho/runner/id16a_nfp.py' adding 'pynx/ptycho/runner/nanomax.py' adding 'pynx/ptycho/runner/nanoscopium.py' adding 'pynx/ptycho/runner/p06.py' adding 'pynx/ptycho/runner/parser.py' adding 'pynx/ptycho/runner/ptypy.py' adding 'pynx/ptycho/runner/runner.py' adding 'pynx/ptycho/runner/simulation.py' adding 'pynx/ptycho/runner/tps25a.py' adding 'pynx/ptycho/runner/test/__init__.py' adding 'pynx/ptycho/runner/test/test_runner.py' adding 'pynx/ptycho/scripts/__init__.py' adding 'pynx/ptycho/scripts/pynx_cristalpty.py' adding 'pynx/ptycho/scripts/pynx_cxipty.py' adding 'pynx/ptycho/scripts/pynx_hermespty.py' adding 'pynx/ptycho/scripts/pynx_id01pty.py' adding 'pynx/ptycho/scripts/pynx_id13pty.py' adding 'pynx/ptycho/scripts/pynx_id16a_nfpty.py' adding 'pynx/ptycho/scripts/pynx_id16apty.py' adding 'pynx/ptycho/scripts/pynx_nanomaxpty.py' adding 'pynx/ptycho/scripts/pynx_nanoscopiumpty.py' adding 'pynx/ptycho/scripts/pynx_nfp2nxtomo.py' adding 'pynx/ptycho/scripts/pynx_p06pty.py' adding 'pynx/ptycho/scripts/pynx_ptycho_analysis.py' adding 'pynx/ptycho/scripts/pynx_ptypy.py' adding 'pynx/ptycho/scripts/pynx_simulationpty.py' adding 'pynx/ptycho/scripts/pynx_tps25apty.py' adding 'pynx/ptycho/test/__init__.py' adding 'pynx/ptycho/test/test_ptycho.py' adding 'pynx/scattering/__init__.py' adding 'pynx/scattering/c_cpu.c' adding 'pynx/scattering/cpu.cpython-313-x86_64-linux-gnu.so' adding 'pynx/scattering/cpu.pyx' adding 'pynx/scattering/detector.py' adding 'pynx/scattering/fhkl.py' adding 'pynx/scattering/fthomson.py' adding 'pynx/scattering/gid.py' adding 'pynx/scattering/sse_mathfun.h' adding 'pynx/scattering/test/__init__.py' adding 'pynx/scattering/test/test_scattering.py' adding 'pynx/scripts/__init__.py' adding 'pynx/scripts/pynx_info.py' adding 'pynx/scripts/pynx_test.py' adding 'pynx/test/__init__.py' adding 'pynx/test/speed.py' adding 'pynx/test/test_imports.py' adding 'pynx/test/test_runner_datasets.py' adding 'pynx/utils/__init__.py' adding 'pynx/utils/_phase_cross_correlation.py' adding 'pynx/utils/array.py' adding 'pynx/utils/benchmark.py' adding 'pynx/utils/correlation.py' adding 'pynx/utils/fourier_shell_correlation.py' adding 'pynx/utils/h5py.py' adding 'pynx/utils/history.py' adding 'pynx/utils/math.py' adding 'pynx/utils/matplotlib.py' adding 'pynx/utils/pattern.py' adding 'pynx/utils/phase.py' adding 'pynx/utils/phase_retrieval_transfer_function.py' adding 'pynx/utils/plot_utils.py' adding 'pynx/utils/registration.py' adding 'pynx/utils/registration_cuda.py' adding 'pynx/utils/rotation.py' adding 'pynx/utils/string.py' adding 'pynx/utils/time.py' adding 'pynx/utils/vsnr_cuda.py' adding 'pynx/utils/cuda/registration.cu' adding 'pynx/utils/cuda/vsnr.cu' adding 'pynx/utils/opencl/correlation.cl' adding 'pynx/utils/opencl/std_dev_pair_elw.cl' adding 'pynx/utils/scripts/__init__.py' adding 'pynx/utils/scripts/pynx_resolution_FSC.py' adding 'pynx/wavefront/__init__.py' adding 'pynx/wavefront/cl_operator.py' adding 'pynx/wavefront/cpu_operator.py' adding 'pynx/wavefront/cu_operator.py' adding 'pynx/wavefront/fresnel.py' adding 'pynx/wavefront/fzp.py' adding 'pynx/wavefront/operator.py' adding 'pynx/wavefront/wavefront.py' adding 'pynx/wavefront/cuda/mask_elw.cu' adding 'pynx/wavefront/cuda/paganin_elw.cu' adding 'pynx/wavefront/cuda/quad_phase_mult_elw.cu' adding 'pynx/wavefront/opencl/mask_elw.cl' adding 'pynx/wavefront/opencl/paganin_elw.cl' adding 'pynx/wavefront/opencl/quad_phase_mult_elw.cl' adding 'pynx/wavefront/test/__init__.py' adding 'pynx/wavefront/test/test_wavefront.py' adding 'pynx-2025.1.dist-info/licenses/LICENSE.txt' adding 'pynx-2025.1.dist-info/METADATA' adding 'pynx-2025.1.dist-info/WHEEL' adding 'pynx-2025.1.dist-info/entry_points.txt' adding 'pynx-2025.1.dist-info/top_level.txt' adding 'pynx-2025.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pynx-2025.1-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_test -- -s custom --test-args="PYTHONPATH={build_dir} {interpreter} pynx/scripts/pynx_test.py" pybuild --test -i python{version} -p 3.13 -s custom --test-args="PYTHONPATH={build_dir} {interpreter} pynx/scripts/pynx_test.py" rm -fr -- /tmp/dh-xdg-rundir-pcXIspiv make[1]: Leaving directory '/<<PKGBUILDDIR>>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/pynx.substvars debian/python3-pynx.substvars debian/python-pynx-doc.substvars rm -fr -- debian/.debhelper/generated/pynx/ debian/pynx/ debian/tmp/ debian/.debhelper/generated/python3-pynx/ debian/python3-pynx/ debian/.debhelper/generated/python-pynx-doc/ debian/python-pynx-doc/ dh_auto_install -O--buildsystem=pybuild install -m0755 -d /<<PKGBUILDDIR>>/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/<<PKGBUILDDIR>>/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir I: pybuild pybuild:334: rm -rf /<<PKGBUILDDIR>>/debian/python3-pynx/usr/bin/ /<<PKGBUILDDIR>>/debian/python3-pynx/usr/pynx/ rm -f debian/pynx.debhelper.log debian/python-pynx-doc.debhelper.log debian/python3-pynx.debhelper.log debian/rules execute_after_dh_auto_install make[1]: Entering directory '/<<PKGBUILDDIR>>' python3 setup.py install_scripts -d debian/pynx/usr/bin /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: License :: CEA CNRS Inria Logiciel Libre License B (CeCILL-B) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install_scripts /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running egg_info writing PyNX.egg-info/PKG-INFO writing dependency_links to PyNX.egg-info/dependency_links.txt writing entry points to PyNX.egg-info/entry_points.txt writing requirements to PyNX.egg-info/requires.txt writing top-level names to PyNX.egg-info/top_level.txt reading manifest file 'PyNX.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'pynx/ptycho/bragg/cuda/*.cu' warning: no files found matching 'pynx/ptycho/bragg2d/cuda/*.cu' adding license file 'LICENSE.txt' writing manifest file 'PyNX.egg-info/SOURCES.txt' Installing pynx-cdi-analysis script to debian/pynx/usr/bin Installing pynx-cdi-analysis.py script to debian/pynx/usr/bin Installing pynx-cdi-id01 script to debian/pynx/usr/bin Installing pynx-cdi-id10 script to debian/pynx/usr/bin Installing pynx-cdi-regrid script to debian/pynx/usr/bin Installing pynx-cdi-regrid.py script to debian/pynx/usr/bin Installing pynx-cdi-simulation script to debian/pynx/usr/bin Installing pynx-cristalpty.py script to debian/pynx/usr/bin Installing pynx-cxipty.py script to debian/pynx/usr/bin Installing pynx-hermespty.py script to debian/pynx/usr/bin Installing pynx-holotomo-id16b script to debian/pynx/usr/bin Installing pynx-id01cdi.py script to debian/pynx/usr/bin Installing pynx-id01pty.py script to debian/pynx/usr/bin Installing pynx-id10cdi.py script to debian/pynx/usr/bin Installing pynx-id13pty.py script to debian/pynx/usr/bin Installing pynx-id16a-nfpty.py script to debian/pynx/usr/bin Installing pynx-id16apty.py script to debian/pynx/usr/bin Installing pynx-info script to debian/pynx/usr/bin Installing pynx-info.py script to debian/pynx/usr/bin Installing pynx-nanomaxpty.py script to debian/pynx/usr/bin Installing pynx-nanoscopiumpty.py script to debian/pynx/usr/bin Installing pynx-nfp2nxtomo script to debian/pynx/usr/bin Installing pynx-ptycho-analysis script to debian/pynx/usr/bin Installing pynx-ptycho-analysis.py script to debian/pynx/usr/bin Installing pynx-ptycho-cristal script to debian/pynx/usr/bin Installing pynx-ptycho-cxi script to debian/pynx/usr/bin Installing pynx-ptycho-hermes script to debian/pynx/usr/bin Installing pynx-ptycho-id01 script to debian/pynx/usr/bin Installing pynx-ptycho-id13 script to debian/pynx/usr/bin Installing pynx-ptycho-id16a script to debian/pynx/usr/bin Installing pynx-ptycho-id16a-nf script to debian/pynx/usr/bin Installing pynx-ptycho-nanomax script to debian/pynx/usr/bin Installing pynx-ptycho-nanoscopium script to debian/pynx/usr/bin Installing pynx-ptycho-p06 script to debian/pynx/usr/bin Installing pynx-ptycho-ptypy script to debian/pynx/usr/bin Installing pynx-ptycho-simulation script to debian/pynx/usr/bin Installing pynx-ptycho-tps25a script to debian/pynx/usr/bin Installing pynx-ptypy.py script to debian/pynx/usr/bin Installing pynx-resolution-FSC.py script to debian/pynx/usr/bin Installing pynx-resolution-fsc script to debian/pynx/usr/bin Installing pynx-simulationpty.py script to debian/pynx/usr/bin Installing pynx-test script to debian/pynx/usr/bin Installing pynx-test.py script to debian/pynx/usr/bin Installing pynx-tps25apty.py script to debian/pynx/usr/bin make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/pynx/usr/share/doc/pynx install -p -m0644 debian/copyright debian/pynx/usr/share/doc/pynx/copyright install -m0755 -d debian/python3-pynx/usr/share/doc/python3-pynx install -p -m0644 debian/copyright debian/python3-pynx/usr/share/doc/python3-pynx/copyright install -m0755 -d debian/python-pynx-doc/usr/share/doc/python-pynx-doc install -p -m0644 debian/copyright debian/python-pynx-doc/usr/share/doc/python-pynx-doc/copyright debian/rules override_dh_sphinxdoc make[1]: Entering directory '/<<PKGBUILDDIR>>' PYBUILD_SYSTEM=custom \ PYBUILD_BUILD_ARGS="cd doc && PYTHONPATH={build_dir} http_proxy='127.0.0.1:9' {interpreter} -m sphinx -N -bhtml . build/html" dh_auto_build # HTML generator pybuild --build -i python{version} -p 3.13 I: pybuild base:311: cd doc && PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynx/build http_proxy='127.0.0.1:9' python3.13 -m sphinx -N -bhtml . build/html Running Sphinx v8.2.3 loading translations [en]... done Extension error! Versions ======== * Platform: linux; (Linux-6.12.48+deb13-cloud-amd64-x86_64-with-glibc2.41) * Python version: 3.13.9 (CPython) * Sphinx version: 8.2.3 * Docutils version: 0.22.2 * Jinja2 version: 3.1.6 * Pygments version: 2.18.0 Last Messages ============= None. Loaded Extensions ================= None. Traceback ========= File "/usr/lib/python3/dist-packages/sphinx/registry.py", line 544, in load_extension raise ExtensionError( __('Could not import extension %s') % extname, err ) from err sphinx.errors.ExtensionError: Could not import extension nbsphinx_link (exception: No module named 'docutils.utils.error_reporting') The full traceback has been saved in: /tmp/sphinx-err-gjexnyit.log To report this error to the developers, please open an issue at <https://github.com/sphinx-doc/sphinx/issues/>. Thanks! Please also report this if it was a user error, so that a better error message can be provided next time. E: pybuild pybuild:389: build: plugin custom failed with: exit code=2: cd doc && PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynx/build http_proxy='127.0.0.1:9' python3.13 -m sphinx -N -bhtml . build/html dh_auto_build: error: pybuild --build -i python{version} -p 3.13 returned exit code 13 make[1]: *** [debian/rules:33: override_dh_sphinxdoc] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:15: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
