Source: cctbx Severity: serious Tags: ftbfs Justification: ftbfs Dear Maintainer,
cctbx currently fails to build from source in sid with the
following symptom:
Obtaining
file:///build/reproducible-path/cctbx-2025.2%2Bds2%2B~3.23.0%2Bds1/dxtbx
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with
status 'done'
ERROR: Project
file:///build/reproducible-path/cctbx-2025.2%2Bds2%2B~3.23.0%2Bds1/dxtbx uses a
build backend that is missing the 'build_editable' hook, so it cannot be
installed in editable mode. Consider using a build backend that supports PEP
660.
Processing:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/cctbx/libtbx_refresh.py"
Generating C++ files in:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/.pybuild/cpython3_3.13/build_/cctbx/eltbx"
Generating C++ files in:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/.pybuild/cpython3_3.13/build_/include/cctbx/boost_python"
Processing:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/crys3d/libtbx_refresh.py"
Processing:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/smtbx/libtbx_refresh.py"
Generating C++ files in:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/.pybuild/cpython3_3.13/build_/include/smtbx/boost_python"
Processing:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/iotbx/libtbx_refresh.py"
Using fable to convert iotbx/pdb/hybrid_36_f.f
Writing: iotbx/pdb/hybrid_36_fem.cpp
Processing:
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/dxtbx/libtbx_refresh.py"
Traceback (most recent call last):
File
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/libtbx/configure.py",
line 33, in <module>
if not run():
~~~^^
File
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/libtbx/configure.py",
line 28, in run
libtbx.env_config.cold_start(sys.argv)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^
File
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/libtbx/env_config.py",
line 2980, in cold_start
env.refresh()
~~~~~~~~~~~^^
File
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/libtbx/env_config.py",
line 2195, in refresh
module.process_libtbx_refresh_py()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File
"/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/libtbx/env_config.py",
line 2508, in process_libtbx_refresh_py
exec(to_str(fh.read()), global_vars)
~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<string>", line 113, in <module>
File "<string>", line 35, in _install_setup_readonly_fallback
File "/usr/lib/python3.13/subprocess.py", line 577, in run
raise CalledProcessError(retcode, process.args,
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/usr/bin/python3.13', '-m',
'pip', 'install', '--prefix',
'/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/.pybuild/cpython3_3.13/build_/dxtbx',
'--no-build-isolation', '--no-deps', '--ignore-installed', '-e',
'/build/reproducible-path/cctbx-2025.2+ds2+~3.23.0+ds1/dxtbx']' returned
non-zero exit status 1.
The error looks to be related to the following deprecation
warning when attempting to build cctbx in testing/forky,
appearing in place of the above error:
Obtaining
file:///build/reproducible-path/cctbx-2024.10%2Bds2%2B~3.22.1%2Bds1/dxtbx
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with
status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Installing collected packages: dxtbx
DEPRECATION: Legacy editable install of dxtbx==3.22.0
from
file:///build/reproducible-path/cctbx-2024.10%2Bds2%2B~3.22.1%2Bds1/dxtbx
(setup.py develop) is deprecated. pip 25.3 will enforce this
behaviour change. A possible replacement is to add a
pyproject.toml or enable --use-pep517, and use setuptools >=
64. If the resulting installation is not behaving as expected,
try using --config-settings editable_mode=compat. Please consult
the setuptools documentation for more information. Discussion
can be found at https://github.com/pypa/pip/issues/11457
Running setup.py develop for dxtbx
Successfully installed dxtbx
[…]
In hope this helps,
--
.''`. Étienne Mollier <[email protected]>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/4, please excuse my verbosity
`- on air: IZZ - Into the Sun
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