output.hpp:28:17: error: 'seqan' is not a namespace-name)

Debian Bug Tracking System Sun, 22 Feb 2026 14:07:27 -0800

Your message dated Sun, 22 Feb 2026 22:04:45 +0000
with message-id <[email protected]>
and subject line Bug#1125646: fixed in lambda-align 1.0.3-9
has caused the Debian Bug report #1125646,
regarding lambda-align: FTBFS: /<<PKGBUILDDIR>>/src/output.hpp:28:17: error: 
'seqan' is not a namespace-name
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1125646: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1125646
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:lambda-align
Version: 1.0.3-8
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202601/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:lambda-align, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --builddirectory=build
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.1
dh_auto_clean --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--builddirectory=build
   dh_clean -O--builddirectory=build
 debian/rules binary
dh binary --builddirectory=build
   dh_update_autotools_config -O--builddirectory=build
   dh_autoreconf -O--builddirectory=build
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'

[... snipped ...]

      |                                                                        ^
/<<PKGBUILDDIR>>/src/lambda.cpp:185:14: error: âBlastProgramâ has not been 
declared [-Wtemplate-body]
  185 |         case BlastProgram::TBLASTN:
      |              ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:188:57: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  188 |                             BlastTabularSpecSelector<h>(),
      |                                                         ^
/<<PKGBUILDDIR>>/src/lambda.cpp:189:50: error: âBlastProgramâ has not been 
declared [-Wtemplate-body]
  189 |                             
BlastProgramSelector<BlastProgram::TBLASTN>());
      |                                                  ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:189:73: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  189 |                             
BlastProgramSelector<BlastProgram::TBLASTN>());
      |                                                                         
^
/<<PKGBUILDDIR>>/src/lambda.cpp:190:14: error: âBlastProgramâ has not been 
declared [-Wtemplate-body]
  190 |         case BlastProgram::TBLASTX:
      |              ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:193:57: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  193 |                             BlastTabularSpecSelector<h>(),
      |                                                         ^
/<<PKGBUILDDIR>>/src/lambda.cpp:194:50: error: âBlastProgramâ has not been 
declared [-Wtemplate-body]
  194 |                             
BlastProgramSelector<BlastProgram::TBLASTX>());
      |                                                  ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:194:73: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  194 |                             
BlastProgramSelector<BlastProgram::TBLASTX>());
      |                                                                         
^
/<<PKGBUILDDIR>>/src/lambda.cpp: At global scope:
/<<PKGBUILDDIR>>/src/lambda.cpp:206:11: error: âBlastTabularSpecâ has not 
been declared
  206 |           BlastTabularSpec h,
      |           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:207:11: error: âBlastProgramâ has not been 
declared
  207 |           BlastProgram p>
      |           ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:211:10: error: âBlastTabularSpecSelectorâ 
has not been declared
  211 |          BlastTabularSpecSelector<h>    const &,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:211:34: error: expected â,â or â...â 
before â<â token
  211 |          BlastTabularSpecSelector<h>    const &,
      |                                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp: In function âint argConv2(const 
LambdaOptions&, const TOutFormat&, int)â:
/<<PKGBUILDDIR>>/src/lambda.cpp:214:16: error: âBlastTabularSpecSelectorâ 
does not name a type [-Wtemplate-body]
  214 |     using Th = BlastTabularSpecSelector<h>;
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:215:16: error: âBlastProgramSelectorâ does 
not name a type [-Wtemplate-body]
  215 |     using Tp = BlastProgramSelector<p>;
      |                ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:52: error: there are no arguments to 
âThâ that depend on a template parameter, so a declaration of âThâ must 
be available [-Wtemplate-body]
  219 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
AminoAcid());
      |                                                    ^~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:58: error: there are no arguments to 
âTpâ that depend on a template parameter, so a declaration of âTpâ must 
be available [-Wtemplate-body]
  219 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
AminoAcid());
      |                                                          ^~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:64: error: there are no arguments to 
âAminoAcidâ that depend on a template parameter, so a declaration of 
âAminoAcidâ must be available [-Wtemplate-body]
  219 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
AminoAcid());
      |                                                                ^~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:52: error: there are no arguments to 
âThâ that depend on a template parameter, so a declaration of âThâ must 
be available [-Wtemplate-body]
  221 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
ReducedAminoAcid<Murphy10>());
      |                                                    ^~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:58: error: there are no arguments to 
âTpâ that depend on a template parameter, so a declaration of âTpâ must 
be available [-Wtemplate-body]
  221 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
ReducedAminoAcid<Murphy10>());
      |                                                          ^~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:64: error: âReducedAminoAcidâ was not 
declared in this scope; did you mean âseqan2::ReducedAminoAcidâ? 
[-Wtemplate-body]
  221 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
ReducedAminoAcid<Murphy10>());
      |                                                                
^~~~~~~~~~~~~~~~
      |                                                                
seqan2::ReducedAminoAcid
/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_base.h:79:7: note: 
âseqan2::ReducedAminoAcidâ declared here
   79 | using ReducedAminoAcid = SimpleType<unsigned char, 
ReducedAminoAcid_<TRedSpec> >;
      |       ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:81: error: âMurphy10â was not declared 
in this scope; did you mean âseqan2::Murphy10â? [-Wtemplate-body]
  221 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
ReducedAminoAcid<Murphy10>());
      |                                                                         
        ^~~~~~~~
      |                                                                         
        seqan2::Murphy10
/usr/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h:85:24: 
note: âseqan2::Murphy10â declared here
   85 | typedef Tag<Murphy10_> Murphy10;
      |                        ^~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:91: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  221 |             return argConv3(options, TOutFormat(), Th(), Tp(), 
ReducedAminoAcid<Murphy10>());
      |                                                                         
                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp: At global scope:
/<<PKGBUILDDIR>>/src/lambda.cpp:242:11: error: âBlastTabularSpecâ has not 
been declared
  242 |           BlastTabularSpec h,
      |           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:243:11: error: âBlastProgramâ has not been 
declared
  243 |           BlastProgram p>
      |           ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:247:10: error: âBlastTabularSpecSelectorâ 
has not been declared
  247 |          BlastTabularSpecSelector<h>    const &,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:247:34: error: expected â,â or â...â 
before â<â token
  247 |          BlastTabularSpecSelector<h>    const &,
      |                                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp: In function âint argConv3(const 
LambdaOptions&, const TOutFormat&, int)â:
/<<PKGBUILDDIR>>/src/lambda.cpp:268:25: error: âBlastTabularSpecSelectorâ 
was not declared in this scope; did you mean 
âseqan2::BlastTabularSpecSelectorâ? [-Wtemplate-body]
  268 |                         BlastTabularSpecSelector<h>(),
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
      |                         seqan2::BlastTabularSpecSelector
/usr/include/seqan/blast/blast_tabular.h:156:8: note: 
âseqan2::BlastTabularSpecSelectorâ declared here
  156 | struct BlastTabularSpecSelector
      |        ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:268:50: error: âhâ was not declared in this 
scope [-Wtemplate-body]
  268 |                         BlastTabularSpecSelector<h>(),
      |                                                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp:268:53: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  268 |                         BlastTabularSpecSelector<h>(),
      |                                                     ^
/<<PKGBUILDDIR>>/src/lambda.cpp:269:25: error: âBlastProgramSelectorâ was 
not declared in this scope; did you mean âseqan2::BlastProgramSelectorâ? 
[-Wtemplate-body]
  269 |                         BlastProgramSelector<p>(),
      |                         ^~~~~~~~~~~~~~~~~~~~
      |                         seqan2::BlastProgramSelector
/usr/include/seqan/blast/blast_base.h:133:8: note: 
âseqan2::BlastProgramSelectorâ declared here
  133 | struct BlastProgramSelector
      |        ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:269:46: error: âpâ was not declared in this 
scope [-Wtemplate-body]
  269 |                         BlastProgramSelector<p>(),
      |                                              ^
/<<PKGBUILDDIR>>/src/lambda.cpp:269:49: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  269 |                         BlastProgramSelector<p>(),
      |                                                 ^
/<<PKGBUILDDIR>>/src/lambda.cpp:271:25: error: there are no arguments to 
âAffineGapsâ that depend on a template parameter, so a declaration of 
âAffineGapsâ must be available [-Wtemplate-body]
  271 |                         AffineGaps());
      |                         ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp: At global scope:
/<<PKGBUILDDIR>>/src/lambda.cpp:277:11: error: âBlastTabularSpecâ has not 
been declared
  277 |           BlastTabularSpec h,
      |           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:278:11: error: âBlastProgramâ has not been 
declared
  278 |           BlastProgram p>
      |           ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:282:10: error: âBlastTabularSpecSelectorâ 
has not been declared
  282 |          BlastTabularSpecSelector<h>    const &,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:282:34: error: expected â,â or â...â 
before â<â token
  282 |          BlastTabularSpecSelector<h>    const &,
      |                                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp: In function âint argConv4(const 
LambdaOptions&, const TOutFormat&, int)â:
/<<PKGBUILDDIR>>/src/lambda.cpp:316:25: error: âIndexSaâ was not declared 
in this scope; did you mean âseqan2::IndexSaâ? [-Wtemplate-body]
  316 |         return realMain<IndexSa<>>(options,
      |                         ^~~~~~~
      |                         seqan2::IndexSa
In file included from /usr/include/seqan/index.h:142:
/usr/include/seqan/index/index_sa_stree.h:58:8: note: âseqan2::IndexSaâ 
declared here
   58 | struct IndexSa {};
      |        ^~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:16: error: parse error in template argument 
list [-Wtemplate-body]
  316 |         return realMain<IndexSa<>>(options,
      |                ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:318:36: error: âBlastTabularSpecSelectorâ 
was not declared in this scope; did you mean 
âseqan2::BlastTabularSpecSelectorâ? [-Wtemplate-body]
  318 |                                    BlastTabularSpecSelector<h>(),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~
      |                                    seqan2::BlastTabularSpecSelector
/usr/include/seqan/blast/blast_tabular.h:156:8: note: 
âseqan2::BlastTabularSpecSelectorâ declared here
  156 | struct BlastTabularSpecSelector
      |        ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:318:61: error: âhâ was not declared in this 
scope [-Wtemplate-body]
  318 |                                    BlastTabularSpecSelector<h>(),
      |                                                             ^
/<<PKGBUILDDIR>>/src/lambda.cpp:318:64: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  318 |                                    BlastTabularSpecSelector<h>(),
      |                                                                ^
/<<PKGBUILDDIR>>/src/lambda.cpp:319:36: error: âBlastProgramSelectorâ was 
not declared in this scope; did you mean âseqan2::BlastProgramSelectorâ? 
[-Wtemplate-body]
  319 |                                    BlastProgramSelector<p>(),
      |                                    ^~~~~~~~~~~~~~~~~~~~
      |                                    seqan2::BlastProgramSelector
/usr/include/seqan/blast/blast_base.h:133:8: note: 
âseqan2::BlastProgramSelectorâ declared here
  133 | struct BlastProgramSelector
      |        ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:319:57: error: âpâ was not declared in this 
scope [-Wtemplate-body]
  319 |                                    BlastProgramSelector<p>(),
      |                                                         ^
/<<PKGBUILDDIR>>/src/lambda.cpp:319:60: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  319 |                                    BlastProgramSelector<p>(),
      |                                                            ^
/<<PKGBUILDDIR>>/src/lambda.cpp:323:25: error: âTFMIndexâ was not declared 
in this scope [-Wtemplate-body]
  323 |         return realMain<TFMIndex<>>(options,
      |                         ^~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:16: error: parse error in template argument 
list [-Wtemplate-body]
  323 |         return realMain<TFMIndex<>>(options,
      |                ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:325:36: error: âBlastTabularSpecSelectorâ 
was not declared in this scope; did you mean 
âseqan2::BlastTabularSpecSelectorâ? [-Wtemplate-body]
  325 |                                    BlastTabularSpecSelector<h>(),
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~
      |                                    seqan2::BlastTabularSpecSelector
/usr/include/seqan/blast/blast_tabular.h:156:8: note: 
âseqan2::BlastTabularSpecSelectorâ declared here
  156 | struct BlastTabularSpecSelector
      |        ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:325:61: error: âhâ was not declared in this 
scope [-Wtemplate-body]
  325 |                                    BlastTabularSpecSelector<h>(),
      |                                                             ^
/<<PKGBUILDDIR>>/src/lambda.cpp:325:64: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  325 |                                    BlastTabularSpecSelector<h>(),
      |                                                                ^
/<<PKGBUILDDIR>>/src/lambda.cpp:326:36: error: âBlastProgramSelectorâ was 
not declared in this scope; did you mean âseqan2::BlastProgramSelectorâ? 
[-Wtemplate-body]
  326 |                                    BlastProgramSelector<p>(),
      |                                    ^~~~~~~~~~~~~~~~~~~~
      |                                    seqan2::BlastProgramSelector
/usr/include/seqan/blast/blast_base.h:133:8: note: 
âseqan2::BlastProgramSelectorâ declared here
  133 | struct BlastProgramSelector
      |        ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:326:57: error: âpâ was not declared in this 
scope [-Wtemplate-body]
  326 |                                    BlastProgramSelector<p>(),
      |                                                         ^
/<<PKGBUILDDIR>>/src/lambda.cpp:326:60: error: expected primary-expression 
before â)â token [-Wtemplate-body]
  326 |                                    BlastProgramSelector<p>(),
      |                                                            ^
/<<PKGBUILDDIR>>/src/lambda.cpp: At global scope:
/<<PKGBUILDDIR>>/src/lambda.cpp:341:11: error: âBlastProgramâ has not been 
declared
  341 |           BlastProgram p,
      |           ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:342:11: error: âBlastTabularSpecâ has not 
been declared
  342 |           BlastTabularSpec h>
      |           ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:346:10: error: âBlastTabularSpecSelectorâ 
has not been declared
  346 |          BlastTabularSpecSelector<h>    const &,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:346:34: error: expected â,â or â...â 
before â<â token
  346 |          BlastTabularSpecSelector<h>    const &,
      |                                  ^
/<<PKGBUILDDIR>>/src/lambda.cpp: In function âint realMain(const 
LambdaOptions&, const TOutFormat&, int)â:
/<<PKGBUILDDIR>>/src/lambda.cpp:351:78: error: âpâ was not declared in this 
scope [-Wtemplate-body]
  351 |     using TGlobalHolder = GlobalDataHolder<TRedAlph, TIndexSpec, 
TOutFormat, p, h>;
      |                                                                         
     ^
/<<PKGBUILDDIR>>/src/lambda.cpp:351:81: error: âhâ was not declared in this 
scope [-Wtemplate-body]
  351 |     using TGlobalHolder = GlobalDataHolder<TRedAlph, TIndexSpec, 
TOutFormat, p, h>;
      |                                                                         
        ^
/<<PKGBUILDDIR>>/src/lambda.cpp:351:82: error: template argument 4 is invalid 
[-Wtemplate-body]
  351 |     using TGlobalHolder = GlobalDataHolder<TRedAlph, TIndexSpec, 
TOutFormat, p, h>;
      |                                                                         
         ^
/<<PKGBUILDDIR>>/src/lambda.cpp:351:82: error: template argument 5 is invalid 
[-Wtemplate-body]
/<<PKGBUILDDIR>>/src/lambda.cpp:352:42: error: âTGlobalHolderâ was not 
declared in this scope; did you mean âGlobalDataHolderâ? [-Wtemplate-body]
  352 |     using TLocalHolder = LocalDataHolder<TGlobalHolder, 
TScoreExtension>;
      |                                          ^~~~~~~~~~~~~
      |                                          GlobalDataHolder
/<<PKGBUILDDIR>>/src/lambda.cpp:352:72: error: template argument 1 is invalid 
[-Wtemplate-body]
  352 |     using TLocalHolder = LocalDataHolder<TGlobalHolder, 
TScoreExtension>;
      |                                                                        ^
/<<PKGBUILDDIR>>/src/lambda.cpp:359:22: error: âTLocalHolderâ was not 
declared in this scope; did you mean âtotalorderâ? [-Wtemplate-body]
  359 |         printOptions<TLocalHolder>(options);
      |                      ^~~~~~~~~~~~
      |                      totalorder
/<<PKGBUILDDIR>>/src/lambda.cpp:361:18: error: expected â;â before 
âglobalHolderâ [-Wtemplate-body]
  361 |     TGlobalHolder globalHolder;
      |                  ^~~~~~~~~~~~~
      |                  ;
/<<PKGBUILDDIR>>/src/lambda.cpp:364:30: error: âglobalHolderâ was not 
declared in this scope; did you mean âGlobalDataHolderâ? [-Wtemplate-body]
  364 |     int ret = prepareScoring(globalHolder, options);
      |                              ^~~~~~~~~~~~
      |                              GlobalDataHolder
/<<PKGBUILDDIR>>/src/lambda.cpp:421:20: error: there are no arguments to 
âsysTimeâ that depend on a template parameter, so a declaration of 
âsysTimeâ must be available [-Wtemplate-body]
  421 |     double start = sysTime();
      |                    ^~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:428:27: error: there are no arguments to 
âlengthâ that depend on a template parameter, so a declaration of 
âlengthâ must be available [-Wtemplate-body]
  428 |                         : length(globalHolder.qryIds));
      |                           ^~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:434:9: error: âTLocalHolderâ was not 
declared in this scope; did you mean âtotalorderâ? [-Wtemplate-body]
  434 |         TLocalHolder localHolder(options, globalHolder);
      |         ^~~~~~~~~~~~
      |         totalorder
/<<PKGBUILDDIR>>/src/lambda.cpp:441:13: error: âlocalHolderâ was not 
declared in this scope [-Wtemplate-body]
  441 |             localHolder.init(t);
      |             ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:481:35: error: âlocalHolderâ was not 
declared in this scope [-Wtemplate-body]
  481 |             globalHolder.stats += localHolder.stats;
      |                                   ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:492:42: error: there are no arguments to 
âsysTimeâ that depend on a template parameter, so a declaration of 
âsysTimeâ must be available [-Wtemplate-body]
  492 |         myPrint(options, 2, "Runtime: ", sysTime() - start, "s.\n\n");
      |                                          ^~~~~~~
make[3]: *** [src/CMakeFiles/lambda_indexer.dir/build.make:82: 
src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: *** [CMakeFiles/Makefile2:194: src/CMakeFiles/lambda_indexer.dir/all] 
Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: *** [src/CMakeFiles/lambda.dir/build.make:82: 
src/CMakeFiles/lambda.dir/lambda.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: *** [CMakeFiles/Makefile2:162: src/CMakeFiles/lambda.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: *** [Makefile:159: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
dh_auto_build: error: cd build && make -j2 INSTALL="install 
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: lambda-align
Source-Version: 1.0.3-9
Done: Enrico Seiler <[email protected]>

We believe that the bug you reported is fixed in the latest version of
lambda-align, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Enrico Seiler <[email protected]> (supplier of updated 
lambda-align package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 22 Feb 2026 19:59:51 +0100
Source: lambda-align
Architecture: source
Version: 1.0.3-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Enrico Seiler <[email protected]>
Closes: 1125595 1125646
Changes:
 lambda-align (1.0.3-9) unstable; urgency=medium
 .
   [ Enrico Seiler ]
   * Team upload.
   * Add SeqAn 2.5.x namespace patch.
     Closes: #1125646
   * Fix autopkgtest using CMake 4.
     Closes: #1125595
   * Add version fix patch.
 .
   [ Sascha Steinbiss ]
   * Add Repository/Repository-Browse metadata.
   * Bump copyright year for debian/* files.
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lambda-align_1.0.3-9.debian.tar.xz
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lambda-align_1.0.3-9.debian.tar.xz
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lambda-align_1.0.3-9_amd64.buildinfo
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lambda-align_1.0.3-9.debian.tar.xz
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lambda-align_1.0.3-9_amd64.buildinfo

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--- End Message ---

Bug#1125646: marked as done (lambda-align: FTBFS: /<>/src/output.hpp:28:17: error: 'seqan' is not a namespace-name)

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