Processing commands for [email protected]: > forcemerge 1108566 1131603 Bug #1108566 [src:gradle] gradle: FTBFS with default Java 25 Bug #1131584 [src:gradle] picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference Bug #1131570 [src:gradle] adql: FTBFS: ./ADQLLib/src/adql/parser/ADQLParser.java:66: error: heading used out of sequence: <H3>, compared to implicit preceding heading: <H1> Removed indication that 1131570 affects src:vdjtools, src:libjdom2-intellij-java, src:darcula, src:barclay, src:adql, src:igv, src:milib, src:dom4j, src:libhttp-nio-java, src:opentest4j, src:xgboost-predictor-java, src:htsjdk, src:gkl, src:capsule-nextflow, src:gatk-fermilite, src:android-platform-tools-apksig, src:libhamcrest-java, and src:capsule-maven-nextflow Added indication that 1131570 affects src:picard-tools Removed indication that 1131603 affects src:capsule-nextflow, src:gatk-fermilite, src:gkl, src:capsule-maven-nextflow, src:libhamcrest-java, src:android-platform-tools-apksig, src:adql, src:igv, src:darcula, src:barclay, src:milib, src:vdjtools, src:libjdom2-intellij-java, src:xgboost-predictor-java, src:opentest4j, src:htsjdk, src:dom4j, and src:libhttp-nio-java Added indication that 1131603 affects src:picard-tools Added tag(s) patch. Added tag(s) patch. Bug #1131584 [src:gradle] picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference Bug #1131603 [src:gradle] gradle: Several packages FTBFS with "java.lang.UnsupportedOperationException: Setting a Security Manager is not supported" Merged 1108566 1131570 1131584 1131603 > thanks Stopping processing here.
Please contact me if you need assistance. -- 1108566: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1108566 1131570: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131570 1131584: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131584 1131603: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131603 Debian Bug Tracking System Contact [email protected] with problems
