Your message dated Tue, 09 Jun 2026 13:34:27 +0000
with message-id <[email protected]>
and subject line Bug#1139528: fixed in r-cran-sets 1.0.25+ds-3
has caused the Debian Bug report #1139528,
regarding r-cran-sets: FTBFS: LaTeX error
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1139528: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139528
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:r-cran-sets
Version: 1.0.25+ds-2
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202606/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-cran-sets, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with vignette --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --with vignette --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
debian/rules execute_before_dh_vignette
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
I: R packages needed for DEP8: testthat
I: R Package: sets Version: 1.0-25
I: Building using R version 4.6.0-5
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 11 Mar 2026 09:13:00 +0900
mkdir -p
/<<BUILDDIR>>/r-cran-sets-1.0.25\+ds/debian/r-cran-sets/usr/lib/R/site-library
R CMD INSTALL -l
/<<BUILDDIR>>/r-cran-sets-1.0.25\+ds/debian/r-cran-sets/usr/lib/R/site-library
--clean . --built-timestamp="'Wed, 11 Mar 2026 09:13:00 +0900'"
* installing *source* package âsetsâ ...
** this is package âsetsâ version â1.0-25â
file âinst/doc/sets.pdfâ is missing
** using staged installation
** libs
using C compiler: âx86_64-linux-gnu-gcc (Debian 15.2.0-17) 15.2.0â
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
closure.c -o closure.o
x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
init.c -o init.o
x86_64-linux-gnu-gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o sets.so closure.o
init.o -L/usr/lib/R/lib -lR
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to
/<<PKGBUILDDIR>>/debian/r-cran-sets/usr/lib/R/site-library/00LOCK-r-cran-sets-1.0.25+ds/00new/sets/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sets)
W: Ignoring specified R dependency: R (>= 2.7.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-proxy for Suggests:proxy
I: Use r-cran-sets as Debian binary package for variables substitution
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_vignette -O--buildsystem=R
R version 4.6.0 (2026-04-24) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> tools::buildVignettes(dir=".", tangle=TRUE, quiet=TRUE)
--- re-building âsets.Rnwâ using Sweave
Attaching package: âproxyâ
The following objects are masked from âpackage:statsâ:
as.dist, dist
The following object is masked from âpackage:baseâ:
as.matrix
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
Error: processing vignette 'sets.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'sets.tex' failed.
LaTeX errors:
! Undefined control sequence.
<argument> cite.\@citeb
\@extra@b@citeb
l.84 \begin{document}
! Emergency stop.
<argument> cite.\@citeb
\@extra@b@citeb
l.84 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building âsets.Rnwâ
SUMMARY: processing the following file failed:
âsets.Rnwâ
Error: Vignette re-building failed.
Execution halted
make: *** [debian/rules:4: binary] Error 1
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: r-cran-sets
Source-Version: 1.0.25+ds-3
Done: Charles Plessy <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-cran-sets, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated r-cran-sets package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 09 Jun 2026 22:04:21 +0900
Source: r-cran-sets
Architecture: source
Version: 1.0.25+ds-3
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Charles Plessy <[email protected]>
Closes: 1139528
Changes:
r-cran-sets (1.0.25+ds-3) unstable; urgency=medium
.
* Team upload.
* Stop building the vignette. Closes: #1139528.
* Standards-Version: 4.7.4 (routine-update)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
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