Your message dated Wed, 10 Jun 2026 22:19:17 +0000
with message-id <[email protected]>
and subject line Bug#1137487: fixed in heudiconv 1.4.0-2
has caused the Debian Bug report #1137487,
regarding heudiconv: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1137487: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1137487
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:heudiconv
Version: 1.4.0-1
Severity: serious
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202605/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/nocheck
(It's a wiki, so you are welcome to contribute)
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:heudiconv, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
adding 'heudiconv-1.4.0.dist-info/METADATA'
adding 'heudiconv-1.4.0.dist-info/WHEEL'
adding 'heudiconv-1.4.0.dist-info/entry_points.txt'
adding 'heudiconv-1.4.0.dist-info/top_level.txt'
adding 'heudiconv-1.4.0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built heudiconv-1.4.0-py3-none-any.whl
I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with
"installer" module
dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was
omitted due to "DEB_BUILD_OPTIONS=nocheck"
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/heudiconv.substvars
rm -fr -- debian/.debhelper/generated/heudiconv/ debian/heudiconv/
debian/tmp/
dh_auto_install --destdir=debian/heudiconv/ -O--buildsystem=pybuild
install -m0755 -d /<<PKGBUILDDIR>>/debian/heudiconv
pybuild --install -i python{version} -p "3.14 3.13"
--dest-dir=/<<PKGBUILDDIR>>/debian/heudiconv --parallel=2
I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir
I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir
debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p build
PYTHONPATH=$(/bin/ls -d ./debian/heudiconv/usr/lib/python*/*-packages | head -n
1) \
help2man -n 'DICOM converter for organizing brain imaging data into structured
directory layouts' \
-N --no-discard-stderr \
"python3 -W ignore ./debian/heudiconv/usr/bin/heudiconv" >|
build/heudiconv.1
find debian -iname *.pyc -delete
# https://github.com/nipy/heudiconv/issues/399
rm -rf debian/heudiconv/usr/lib/python*/*-packages/Research
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -O--buildsystem=pybuild
install -m0755 -d debian/heudiconv/usr/share/doc/heudiconv
install -p -m0644 debian/copyright
debian/heudiconv/usr/share/doc/heudiconv/copyright
dh_installchangelogs -O--buildsystem=pybuild
install -m0755 -d debian/heudiconv/usr/share/doc/heudiconv
install -p -m0644
debian/.debhelper/generated/heudiconv/dh_installchangelogs.dch.trimmed
debian/heudiconv/usr/share/doc/heudiconv/changelog.Debian
install -p -m0644 ./CHANGELOG.md
debian/heudiconv/usr/share/doc/heudiconv/changelog
dh_installman -O--buildsystem=pybuild
install -m0755 -d debian/heudiconv/usr/share/man/man1/
install -p -m0644 ./build/heudiconv.1
debian/heudiconv/usr/share/man/man1/heudiconv.1
man-recode --to-code UTF-8 --suffix .dh-new
debian/heudiconv/usr/share/man/man1/heudiconv.1
mv debian/heudiconv/usr/share/man/man1/heudiconv.1.dh-new
debian/heudiconv/usr/share/man/man1/heudiconv.1
chmod 0644 -- debian/heudiconv/usr/share/man/man1/heudiconv.1
dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:87: version: 7.20260309
D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3',
'-O--buildsystem=pybuild']
D: dh_python3 dh_python3:89: options:
DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False,
arch=None, clean_dbg_pkg=True, compile_all=False, depends=[],
depends_section=[], guess_deps=True, ignore_shebangs=False,
no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[],
private_dir=None, recommends=[], recommends_section=[], regexpr=[],
remaining_packages=False, requires=[], shebang=None, skip_private=False,
suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False)
D: dh_python3 dh_python3:90: supported Python versions: 3.13,3.14 (default=3.13)
D: dh_python3 debhelper:223: source=heudiconv, binary packages=['heudiconv']
D: dh_python3 dh_python3:117: processing package heudiconv...
D: dh_python3 fs:60: moving files from
debian/heudiconv/usr/lib/python3.13/dist-packages to
debian/heudiconv/usr/lib/python3/dist-packages/
D: dh_python3 fs:60: moving files from
debian/heudiconv/usr/lib/python3.14/dist-packages to
debian/heudiconv/usr/lib/python3/dist-packages/
I: dh_python3 tools:128: replacing shebang in
debian/heudiconv/usr/bin/heudiconv_monitor
I: dh_python3 tools:128: replacing shebang in debian/heudiconv/usr/bin/heudiconv
D: dh_python3 fs:199: Writing INSTALLER in
debian/heudiconv/usr/lib/python3/dist-packages/heudiconv-1.4.0.dist-info
D: dh_python3 fs:210: Deleting RECORD in
debian/heudiconv/usr/lib/python3/dist-packages/heudiconv-1.4.0.dist-info
D: dh_python3 fs:414: package heudiconv details = {'requires.txt': set(),
'egg-info': set(), 'dist-info':
{'debian/heudiconv/usr/lib/python3/dist-packages/heudiconv-1.4.0.dist-info/METADATA'},
'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3},
'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers':
set(), 'ext_stableabi': set(), 'ext_no_version': set()}
D: dh_python3 depends:148: generating dependencies for package heudiconv
D: dh_python3 pydist:237: trying to find dependency for dcmstack>=0.8
(python=None)
D: dh_python3 pydist:281: dependency: module dcmstack is known to pydist:
[PyDist(name='dcmstack', versions={Version('3.13'), Version('3.14')},
dependency='python3-dcmstack', standard=None, rules=[])]
D: dh_python3 pydist:365: dependency: included in build-deps
D: dh_python3 pydist:237: trying to find dependency for filelock>=3.0.12
(python=None)
D: dh_python3 pydist:281: dependency: module filelock is known to pydist:
[PyDist(name='filelock', versions={Version('3.13'), Version('3.14')},
dependency='python3-filelock', standard=None, rules=[])]
D: dh_python3 pydist:365: dependency: included in build-deps
D: dh_python3 pydist:237: trying to find dependency for nibabel>=5.3.1
(python=None)
D: dh_python3 pydist:281: dependency: module nibabel is known to pydist:
[PyDist(name='nibabel', versions={Version('3.13'), Version('3.14')},
dependency='python3-nibabel', standard=None, rules=[])]
D: dh_python3 pydist:365: dependency: included in build-deps
D: dh_python3 pydist:237: trying to find dependency for nipype>=1.2.3
(python=None)
D: dh_python3 pydist:281: dependency: module nipype is known to pydist:
[PyDist(name='nipype', versions={Version('3.13'), Version('3.14')},
dependency='python3-nipype', standard=None, rules=[])]
D: dh_python3 pydist:365: dependency: included in build-deps
D: dh_python3 pydist:237: trying to find dependency for pydicom>=1.0.0
(python=None)
D: dh_python3 pydist:281: dependency: module pydicom is known to pydist:
[PyDist(name='pydicom', versions={Version('3.13'), Version('3.14')},
dependency='python3-pydicom', standard=None, rules=[])]
D: dh_python3 pydist:365: dependency: included in build-deps
D: dh_python3 depends:330: D={'python3-dcmstack', 'python3-nipype',
'python3:any', 'python3-pydicom', 'python3-filelock', 'python3-nibabel'}; R=[];
S=[]; E=[], B=[]; RT=[]
debian/rules execute_after_dh_python3
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# No idea why the test is not moved
mv debian/heudiconv/usr/lib/python3.*/dist-packages/heudiconv/tests
debian/heudiconv/usr/lib/python3/dist-packages/heudiconv/tests
mv: cannot stat
'debian/heudiconv/usr/lib/python3.*/dist-packages/heudiconv/tests': No such
file or directory
make[1]: *** [debian/rules:41: execute_after_dh_python3] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:20: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: heudiconv
Source-Version: 1.4.0-2
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
heudiconv, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated heudiconv package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 10 Jun 2026 23:26:13 +0200
Source: heudiconv
Architecture: source
Version: 1.4.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1137487
Changes:
heudiconv (1.4.0-2) unstable; urgency=medium
.
* Team upload.
* absolute-imports.patch: new: allow relocating tests.
* d/rules: rearrange pybuild test execution.
This change serves the purpose of self containing test execution for
autopkgtest and also fixes problems of stability with the nocheck
profile. (Closes: #1137487)
* d/control: activate autopkgtest-pkg-pybuild.
* d/patches/*: minor fixups.
This change identifies patches that do not need forward upstream and
fixes a typo of the "allow to" category.
Checksums-Sha1:
8a4fd1c76b00711f3d7d7ac9dfea1e082c88e44e 2440 heudiconv_1.4.0-2.dsc
26728f0cebd5f27120aa3e28708fde2479fb0ca8 5496 heudiconv_1.4.0-2.debian.tar.xz
Checksums-Sha256:
1629c9f5879b38e51ff004bfa0ae576e65ac11ab14e46c299ae52a02bae8c6de 2440
heudiconv_1.4.0-2.dsc
d4ff4a36ff8e59ec767ba937d94718959efc36a0df5497c86265e68ff17a1c23 5496
heudiconv_1.4.0-2.debian.tar.xz
Files:
d39cd5817a9f0c03afd2a9c6e1dda7f5 2440 science optional heudiconv_1.4.0-2.dsc
9cde813ea3f922bdad7e00fe5824ab72 5496 science optional
heudiconv_1.4.0-2.debian.tar.xz
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