Package: src:heudiconv Version: 1.4.0-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202606/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:heudiconv, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.14 3.13" --parallel=2 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/heudiconv.substvars debian/files rm -fr -- debian/heudiconv/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ [... snipped ...] heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:480: in workflow prep_conversion( heudiconv/convert.py:215: in prep_conversion seqinfo = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made =========================== short test summary info ============================ FAILED tests/test_dicoms.py::test_private_csa_header - ModuleNotFoundError: N... FAILED tests/test_dicoms.py::test_embed_dicom_and_nifti_metadata - ModuleNotF... FAILED tests/test_heuristics.py::test_scans_keys_reproin[invocation0] - Modul... FAILED tests/test_heuristics.py::test_ls - ModuleNotFoundError: No module nam... FAILED tests/test_heuristics.py::test_scout_conversion - ModuleNotFoundError:... FAILED tests/test_heuristics.py::test_notop[bidsoptions0] - ModuleNotFoundErr... FAILED tests/test_heuristics.py::test_notop[bidsoptions1] - ModuleNotFoundErr... FAILED tests/test_main.py::test_cache - ModuleNotFoundError: No module named ... FAILED tests/test_regression.py::test_grouping[merged] - ModuleNotFoundError:... =========== 9 failed, 185 passed, 10 skipped, 5 deselected in 9.76s ============ E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_heudiconv/build; python3.14 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke' I: pybuild pybuild:390: rm -rf /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/heudiconv/tests ; cp -a heudiconv/tests /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/ I: pybuild base:385: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build; python3.13 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke' ============================= test session starts ============================== platform linux -- Python 3.13.14, pytest-9.0.3, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>> configfile: tox.ini plugins: typeguard-4.4.4 collected 209 items / 5 deselected / 204 selected heudiconv/external/tests/test_dlad.py .. [ 0%] heudiconv/heuristics/test_reproin.py .................. [ 9%] heudiconv/queue.py . [ 10%] tests/test_archives.py .......... [ 15%] tests/test_bids.py ........................................s. [ 35%] tests/test_convert.py .......... [ 40%] tests/test_dicoms.py FF........................ss [ 54%] tests/test_heuristics.py .FFF.FF. [ 58%] tests/test_main.py ..........F... [ 65%] tests/test_monitor.py ssss [ 67%] tests/test_queue.py ... [ 68%] tests/test_regression.py sssF [ 70%] tests/test_tarballs.py . [ 71%] tests/test_utils.py .................................................... [ 96%] ....... [100%] =================================== FAILURES =================================== ___________________________ test_private_csa_header ____________________________ tests/test_dicoms.py:38: in test_private_csa_header assert parse_private_csa_header(dcm_data, pub, priv) != "" ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' _____________________ test_embed_dicom_and_nifti_metadata ______________________ /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/tests/test_dicoms.py:57: in test_embed_dicom_and_nifti_metadata embed_dicom_and_nifti_metadata(dcmfiles, out_prefix + ".nii.gz", infofile, None) /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build/heudiconv/dicoms.py:661: in embed_dicom_and_nifti_metadata import dcmstack as ds /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' _____________________ test_scans_keys_reproin[invocation0] _____________________ tests/test_heuristics.py:137: in test_scans_keys_reproin runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:410: in workflow study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made ___________________________________ test_ls ____________________________________ tests/test_heuristics.py:157: in test_ls runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:379: in workflow process_extra_commands( heudiconv/main.py:104: in process_extra_commands study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made ____________________________ test_scout_conversion _____________________________ tests/test_heuristics.py:165: in test_scout_conversion runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:410: in workflow study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made ___________________________ test_notop[bidsoptions0] ___________________________ tests/test_heuristics.py:222: in test_notop runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:410: in workflow study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made ___________________________ test_notop[bidsoptions1] ___________________________ tests/test_heuristics.py:222: in test_notop runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:410: in workflow study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made __________________________________ test_cache __________________________________ tests/test_main.py:325: in test_cache runner(args) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:410: in workflow study_sessions = get_study_sessions( heudiconv/parser.py:240: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made ____________________________ test_grouping[merged] _____________________________ tests/test_regression.py:172: in test_grouping runner(hargs) heudiconv/cli/run.py:30: in main workflow(**kwargs) heudiconv/main.py:480: in workflow prep_conversion( heudiconv/convert.py:215: in prep_conversion seqinfo = group_dicoms_into_seqinfos( heudiconv/dicoms.py:338: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ heudiconv/dicoms.py:175: in validate_dicom parse_private_csa_header(mw.dcm_data, "ProtocolName", "tProtocolName") heudiconv/dicoms.py:806: in parse_private_csa_header import dcmstack.extract as dsextract /usr/lib/python3/dist-packages/dcmstack/__init__.py:7: in <module> from .dcmstack import * /usr/lib/python3/dist-packages/dcmstack/dcmstack.py:30: in <module> from . import snd /usr/lib/python3/dist-packages/dcmstack/snd.py:7: in <module> import pint E ModuleNotFoundError: No module named 'pint' ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:362 Could not check for version updates: Connection to server could not be made =========================== short test summary info ============================ FAILED tests/test_dicoms.py::test_private_csa_header - ModuleNotFoundError: N... FAILED tests/test_dicoms.py::test_embed_dicom_and_nifti_metadata - ModuleNotF... FAILED tests/test_heuristics.py::test_scans_keys_reproin[invocation0] - Modul... FAILED tests/test_heuristics.py::test_ls - ModuleNotFoundError: No module nam... FAILED tests/test_heuristics.py::test_scout_conversion - ModuleNotFoundError:... FAILED tests/test_heuristics.py::test_notop[bidsoptions0] - ModuleNotFoundErr... FAILED tests/test_heuristics.py::test_notop[bidsoptions1] - ModuleNotFoundErr... FAILED tests/test_main.py::test_cache - ModuleNotFoundError: No module named ... FAILED tests/test_regression.py::test_grouping[merged] - ModuleNotFoundError:... =========== 9 failed, 185 passed, 10 skipped, 5 deselected in 9.52s ============ E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_heudiconv/build; python3.13 -m pytest -k 'not test_bvals_are_zero and not test_reproin_largely_smoke' rm -fr -- /tmp/dh-xdg-rundir-zAXBS81O dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" --parallel=2 returned exit code 13 make: *** [debian/rules:25: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
