Your message dated Fri, 10 Jul 2026 13:34:13 +0000
with message-id <[email protected]>
and subject line Bug#1118697: fixed in r-bioc-biocgenerics 0.58.1-1
has caused the Debian Bug report #1118697,
regarding r-bioc-biocgenerics: prepare r-cran-* r-bioc-* architecture
transition by removing Bioc from Testing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1118697: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1118697
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: r-bioc-biocgenerics
Severity: serious
X-Debbugs-CC: [email protected]
Hello everybody,
The next release of Bioconductor is planned for the end of this month.
Upstream, Bioconductor packages are regression-tested within their release
only. As we can not take cross-release stability on our shoulders, we
have for some time made all r-bioc-* packages depend on a virtual package
called r-api-bioc-<versionnumber>. For this reason, each Bioconductor
release causes a transition in Debian.
In addition, this year, we are planning a big change for the R packages
maintained by the r-pkg-team: we will align our support to only the
architectural features supported upstream, which are 64-bit and little-endian.
This will tangle with the Bioconductor transition.
To clear the path forward, I am opening this RC bug against
r-bioc-biocgenerics, which provides r-api-bioc-3.20 at the moment, so that the
whole Bioconductor and its reverse dependencies are removed from Testing.
While I have not been able to inspect the reverse dependency network
of Bioconductor, I am confident that it is limited to bioinformatics
packages only, as Bioconductor itself is specialised in this area.
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Tooting from home https://framapiaf.org/@charles_plessy
- You do not have my permission to use this email to train an AI -
--- End Message ---
--- Begin Message ---
Source: r-bioc-biocgenerics
Source-Version: 0.58.1-1
Done: Charles Plessy <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-biocgenerics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated r-bioc-biocgenerics
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 10 Jul 2026 22:17:58 +0900
Source: r-bioc-biocgenerics
Architecture: source
Version: 0.58.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Charles Plessy <[email protected]>
Closes: 1118697
Changes:
r-bioc-biocgenerics (0.58.1-1) unstable; urgency=medium
.
* Team upload.
* Start Bioconductor transition. Closes: #1118697.
* Use uscan v5 $template template. (routine-update)
* New upstream version
* Standards-Version: 4.7.4 (routine-update)
* Restrict to R packages team core architectures (routine-update)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
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