Your message dated Fri, 17 Jul 2026 21:04:32 +0000
with message-id <[email protected]>
and subject line Bug#1141751: fixed in unifrac-tools 1.6.1-2
has caused the Debian Bug report #1141751,
regarding unifrac-tools: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1141751: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141751
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:unifrac-tools
Version: 1.6.1-1
Severity: serious
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202607/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/nocheck
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:unifrac-tools, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
make api_cpu_basic
make[5]: Entering directory '/<<PKGBUILDDIR>>'
export BUILD_VARIANT=cpu_basic ; export BUILD_FULL_OPTIMIZATION=False ; cd src
&& make clean && make api
make[6]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o ssu_cpu_basic faithpd_cpu_basic *.a test_su test_ska test_api
test_su_api libssu_cpu_basic.so unifrac_task_noclass_*.cpp unifrac_task_api_*.h
unifrac_task.cpp
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[6]: Entering directory '/<<PKGBUILDDIR>>/src'
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tree.cpp -o tree.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom.cpp -o biom.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_inmem.cpp -o biom_inmem.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_subsampled.cpp -o
biom_subsampled.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tsv.cpp -o tsv.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
h5c++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1
-DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac_internal.cpp -o
unifrac_internal.o
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
python3 generate_unifrac_task_noclass.py cpu direct >
unifrac_task_noclass_cpu.cpp
/bin/sh: 1: python3: not found
make[6]: *** [Makefile:189: unifrac_task_noclass_cpu.cpp] Error 127
make[6]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[5]: *** [Makefile:139: api_cpu_basic] Error 2
make[5]: Leaving directory '/<<PKGBUILDDIR>>'
make[4]: *** [Makefile:62: all_cpu_basic] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: *** [Makefile:39: all_cpu] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:28: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 INSTALL="install --strip-program=true"
PREFIX=/<<PKGBUILDDIR>>/debian/tmp/usr returned exit code 2
make[1]: *** [debian/rules:15: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: unifrac-tools
Source-Version: 1.6.1-2
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
unifrac-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated unifrac-tools
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 17 Jul 2026 22:35:04 +0200
Source: unifrac-tools
Architecture: source
Version: 1.6.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1141751
Changes:
unifrac-tools (1.6.1-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Build reproducibly
* Forwarded patch
.
[ Étienne Mollier ]
* d/control: drop <!nocheck> for python3. (Closes: #1141751)
* d/control: bump to debhelper-compat 14.
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unifrac-tools_1.6.1-2.debian.tar.xz
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