Your message dated Sat, 08 Aug 2026 17:49:30 +0000
with message-id <[email protected]>
and subject line Bug#1129279: fixed in openstructure 2.11.1-3.1
has caused the Debian Bug report #1129279,
regarding openstructure: FTBFS with Python 3.14: tests segfault
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1129279: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1129279
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: openstructure
Version: 2.11.1-1
Severity: important
Tags: ftbfs forky sid
User: [email protected]
Usertags: python3.14
Hi Maintainer
openstructure will FTBFS once Python 3.14 is the default version in
Debian due to segmentation faults in the tests. I've copied the
output from a failing autopkgtest log below, as a build log is even
less helpful.
Regards
Graham
454s autopkgtest [16:06:47]: test python: [-----------------------
454s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5017 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5024 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5026 Segmentation fault (core dumped) python3 ${TEST}
455s
/tmp/autopkgtest.61Ffy1/build.0c8/src/modules/bindings/tests/test_blast.py:81:
SyntaxWarning: "\d" is an invalid escape sequence. Such sequences will
not work in the future. Did you mean "\\d"? A raw string is also an
option.
455s re_v = re.compile('\d+\.\d+\.\d+')
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5029 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5031 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5033 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5035 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5037 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5039 Segmentation fault (core dumped) python3 ${TEST}
455s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5041 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5043 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5045 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5047 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5049 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5051 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5054 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5056 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5058 Segmentation fault (core dumped) python3 ${TEST}
456s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5060 Segmentation fault (core dumped) python3 ${TEST}
457s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5063 Segmentation fault (core dumped) python3 ${TEST}
457s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5066 Segmentation fault (core dumped) python3 ${TEST}
457s Traceback (most recent call last):
457s File
"/tmp/autopkgtest.61Ffy1/build.0c8/src/modules/gfx/tests/test_entity.py",
line 1, in <module>
457s eh=io.LoadPDB("1crn",remote=True)
457s ^^
457s NameError: name 'io' is not defined. Did you mean: 'id'? Or did
you forget to import 'io'?
457s /tmp/autopkgtest.61Ffy1/build.0c8/src/debian/tests/python: line
8: 5070 Segmentation fault (core dumped) python3 ${TEST}
457s Traceback (most recent call last):
457s File
"/tmp/autopkgtest.61Ffy1/build.0c8/src/modules/gfx/tests/test_gost_export.py",
line 1, in <module>
457s import desost_util as util
457s ModuleNotFoundError: No module named 'desost_util'
457s Traceback (most recent call last):
457s File
"/tmp/autopkgtest.61Ffy1/build.0c8/src/modules/gfx/tests/test_gost_import.py",
line 3, in <module>
457s with open("test.gost","rb") as gf:
457s ~~~~^^^^^^^^^^^^^^^^^^
457s FileNotFoundError: [Errno 2] No such file or directory: 'test.gost'
--- End Message ---
--- Begin Message ---
Source: openstructure
Source-Version: 2.11.1-3.1
Done: Maximiliano Curia <[email protected]>
We believe that the bug you reported is fixed in the latest version of
openstructure, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Maximiliano Curia <[email protected]> (supplier of updated openstructure package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 05 Aug 2026 15:52:18 +0200
Source: openstructure
Architecture: source
Version: 2.11.1-3.1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Maximiliano Curia <[email protected]>
Closes: 1129279
Changes:
openstructure (2.11.1-3.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Force boost python version to match the default python version
(Closes: #1129279)
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