Your message dated Tue, 11 Aug 2026 13:34:32 +0000
with message-id <[email protected]>
and subject line Bug#1139613: fixed in stimfit 0.17.2-1
has caused the Debian Bug report #1139613,
regarding stimfit: FTBFS against HDF5 2.1.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1139613: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139613
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: stimfit
Version: 0.16.11-2
Severity: important
Tags: ftbfs patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, stimfit FTBFS because its check on HDF5
version doesn't expect a majot release number > 1.
The attached patch fixes this issue and works with both HDF5 releases
1.14.6 and 2.1.0.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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diff -Nru stimfit-0.16.11/debian/changelog stimfit-0.16.11/debian/changelog
--- stimfit-0.16.11/debian/changelog 2026-03-02 09:29:04.000000000 +0100
+++ stimfit-0.16.11/debian/changelog 2026-06-05 15:24:07.000000000 +0200
@@ -1,3 +1,10 @@
+stimfit (0.16.11-2.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <[email protected]> Fri, 05 Jun 2026 15:24:07 +0200
+
stimfit (0.16.11-2) unstable; urgency=medium
* Packaging tidy and dh improvements
diff -Nru stimfit-0.16.11/debian/patches/hdf5-2.1.0.patch
stimfit-0.16.11/debian/patches/hdf5-2.1.0.patch
--- stimfit-0.16.11/debian/patches/hdf5-2.1.0.patch 1970-01-01
01:00:00.000000000 +0100
+++ stimfit-0.16.11/debian/patches/hdf5-2.1.0.patch 2026-06-05
15:24:07.000000000 +0200
@@ -0,0 +1,13 @@
+Index: stimfit-0.16.11/src/libstfio/hdf5/hdf5lib.cpp
+===================================================================
+--- stimfit-0.16.11.orig/src/libstfio/hdf5/hdf5lib.cpp
++++ stimfit-0.16.11/src/libstfio/hdf5/hdf5lib.cpp
+@@ -13,7 +13,7 @@
+ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301,
USA.
+
+ #include "hdf5.h"
+-#if H5_VERS_MINOR > 6
++#if H5_VERS_MAJOR > 1 || H5_VERS_MINOR > 6
+ #include "hdf5_hl.h"
+ #else
+ #include "H5TA.h"
diff -Nru stimfit-0.16.11/debian/patches/series
stimfit-0.16.11/debian/patches/series
--- stimfit-0.16.11/debian/patches/series 1970-01-01 01:00:00.000000000
+0100
+++ stimfit-0.16.11/debian/patches/series 2026-06-05 15:24:07.000000000
+0200
@@ -0,0 +1 @@
+hdf5-2.1.0.patch
--- End Message ---
--- Begin Message ---
Source: stimfit
Source-Version: 0.17.2-1
Done: Christoph Schmidt-Hieber <[email protected]>
We believe that the bug you reported is fixed in the latest version of
stimfit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Christoph Schmidt-Hieber <[email protected]> (supplier of updated stimfit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 11 Aug 2026 11:03:52 +0000
Source: stimfit
Architecture: source
Version: 0.17.2-1
Distribution: unstable
Urgency: medium
Maintainer: Christoph Schmidt-Hieber <[email protected]>
Changed-By: Christoph Schmidt-Hieber <[email protected]>
Closes: 1139613 1140597
Changes:
stimfit (0.17.2-1) unstable; urgency=medium
.
* New upstream release
* Fix command-line help to print usage and exit successfully.
* Exercise command-line help under Xvfb in autopkgtest without masking
failures. (Closes: #1140597)
* Fix FTBFS with HDF5 2.1 by accepting the unnamespaced CMake targets
exported by libhdf5-dev. (Closes: #1139613)
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