Control: tags -1 + patch Hi,
Sebastian Ramacher a écrit le 09/08/2026 à 17:27 :
Source: bitshuffle Version: 0.5.2-1 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) X-Debbugs-Cc: [email protected] Dear maintainer, bitshuffle FTBFS: make[1]: Entering directory '/build/reproducible-path/bitshuffle-0.5.2' CC=mpicc dh_auto_build pybuild --build -i python{version} -p "3.13 3.14" --parallel=6 I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.13_bitshuffle * Building wheel... Traceback (most recent call last): File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 389, in <module> main() ~~~~^^ File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in main json_out["return_val"] = hook(**hook_input["kwargs"]) ~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 280, in build_wheel return _build_backend().build_wheel( ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ wheel_directory, config_settings, metadata_directory ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ) ^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 435, in build_wheel return _build(['bdist_wheel']) File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 426, in _build return self._build_with_temp_dir( ~~~~~~~~~~~~~~~~~~~~~~~~~^ cmd, ^^^^ ...<3 lines>... self._arbitrary_args(config_settings), ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ) ^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir self.run_setup() ~~~~~~~~~~~~~~^^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 320, in run_setup exec(code, locals()) ~~~~^^^^^^^^^^^^^^^^ File "<string>", line 169, in <module> ValueError: list.remove(x): x not in list TIP pass --env-dir and --sdist-extract-dir to keep the build environment and sources, then see https://build.pypa.io/en/stable/how-to/troubleshooting.html#debug-a-failed-build for help debugging a failed build ERROR Backend subprocess exited when trying to invoke build_wheel E: pybuild pybuild:485: build: plugin pyproject failed with: exit code=1: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.13_bitshuffle I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.14_bitshuffle * Building wheel... Traceback (most recent call last): File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 389, in <module> main() ~~~~^^ File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in main json_out["return_val"] = hook(**hook_input["kwargs"]) ~~~~^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 280, in build_wheel return _build_backend().build_wheel( ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ wheel_directory, config_settings, metadata_directory ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ) ^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 435, in build_wheel return _build(['bdist_wheel']) File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 426, in _build return self._build_with_temp_dir( ~~~~~~~~~~~~~~~~~~~~~~~~~^ cmd, ^^^^ ...<3 lines>... self._arbitrary_args(config_settings), ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ) ^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir self.run_setup() ~~~~~~~~~~~~~~^^ File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 320, in run_setup exec(code, locals()) ~~~~^^^^^^^^^^^^^^^^ File "<string>", line 169, in <module> ValueError: list.remove(x): x not in list TIP pass --env-dir and --sdist-extract-dir to keep the build environment and sources, then see https://build.pypa.io/en/stable/how-to/troubleshooting.html#debug-a-failed-build for help debugging a failed build ERROR Backend subprocess exited when trying to invoke build_wheel E: pybuild pybuild:485: build: plugin pyproject failed with: exit code=1: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/bitshuffle-0.5.2/.pybuild/cpython3_3.14_bitshuffle dh_auto_build: error: pybuild --build -i python{version} -p "3.13 3.14" --parallel=6 returned exit code 13 make[1]: *** [debian/rules:34: override_dh_auto_build] Error 25 See https://buildd.debian.org/status/fetch.php?pkg=bitshuffle&arch=amd64&ver=0.5.2-1%2Bb5&stamp=1786283965&raw=0 for details.
Patch proposal attached. Best, _g.
diff -Nru bitshuffle-0.5.2/debian/changelog bitshuffle-0.5.2/debian/changelog --- bitshuffle-0.5.2/debian/changelog 2024-11-19 12:15:44.000000000 +0100 +++ bitshuffle-0.5.2/debian/changelog 2026-05-28 21:46:46.000000000 +0200 @@ -1,3 +1,10 @@ +bitshuffle (0.5.2-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Fix FTBFS against HDF5 >= 2.1.0 (closes: #1144001) + + -- Gilles Filippini <[email protected]> Thu, 28 May 2026 21:46:46 +0200 + bitshuffle (0.5.2-1) unstable; urgency=medium * New upstream version 0.5.2 diff -Nru bitshuffle-0.5.2/debian/patches/hdf5-2.patch bitshuffle-0.5.2/debian/patches/hdf5-2.patch --- bitshuffle-0.5.2/debian/patches/hdf5-2.patch 1970-01-01 01:00:00.000000000 +0100 +++ bitshuffle-0.5.2/debian/patches/hdf5-2.patch 2026-05-28 21:46:46.000000000 +0200 @@ -0,0 +1,14 @@ +Index: bitshuffle-0.5.2/setup.py +=================================================================== +--- bitshuffle-0.5.2.orig/setup.py ++++ bitshuffle-0.5.2/setup.py +@@ -166,7 +166,8 @@ h5filter = Extension( + + if not sys.platform.startswith("win"): + h5filter.sources.append("src/hdf5_dl.c") +- h5filter.libraries.remove("hdf5") ++ if "hdf5" in h5filter.libraries: ++ h5filter.libraries.remove("hdf5") + + filter_plugin = Extension( + "bitshuffle.plugin.libh5bshuf", diff -Nru bitshuffle-0.5.2/debian/patches/series bitshuffle-0.5.2/debian/patches/series --- bitshuffle-0.5.2/debian/patches/series 2024-11-19 12:15:44.000000000 +0100 +++ bitshuffle-0.5.2/debian/patches/series 2026-05-28 21:46:46.000000000 +0200 @@ -3,3 +3,4 @@ 0003-link-with-libzstd.patch 0004-cython-and-setuptools-are-not-runtime-dependencies.patch 0005-remove-march-and-mcpu-to-avoid-FTBFS.patch +hdf5-2.patch
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