Your message dated Fri, 11 Sep 2026 10:05:14 +0000
with message-id <[email protected]>
and subject line Bug#1146268: fixed in librcsb-core-wrapper 1.005-14
has caused the Debian Bug report #1146268,
regarding librcsb-core-wrapper: FTBFS: collect2: error: ld returned 1 exit
status
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1146268: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1146268
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:librcsb-core-wrapper
Version: 1.005-13
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202608/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:librcsb-core-wrapper, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
a - regexec.o
a - regfree.o
../etc/cifinstall -m 0444 ./lib/all.a ../lib
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -O -fPIC -std=c++11 -Wall
-Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW
-I./include -I../include -I/usr/include -c src/xml2mmcif.C -o obj/xml2mmcif.o
g++ -Wl,-z,relro -Wl,-z,now -w -L/usr/lib obj/xml2mmcif.o
../lib/pdbml-parser.a ../lib/dict-obj-file.a ../lib/cif-file-util.a
../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a
../lib/regex.a -lxerces-c -lm -o ./bin/xml2mmcif
make[3]: Leaving directory '/<<PKGBUILDDIR>>/pdbml-parser'
------------------------------------------------------------
**** Making cctbx ****
------------------------------------------------------------
make[3]: Entering directory '/<<PKGBUILDDIR>>/cctbx'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/cctbx'
libtool: link: g++ -fPIC -DPIC -shared -nostdlib lib/.lib
[too-long-redacted] s/librcsb-core-wrapper.so.0.0.1
/usr/bin/x86_64-linux-gnu-ld.bfd: lib/.libs/CifString.o: in function
`_GLOBAL__sub_I_CifString.C':
./common/src/CifString.C:18:(.text+0x1298): undefined reference to
`__dso_handle'
/usr/bin/x86_64-linux-gnu-ld.bfd: lib/.libs/CifString.o: relocation
R_X86_64_PC32 against undefined hidden symbol `__dso_handle' can not be used
when making a shared object
/usr/bin/x86_64-linux-gnu-ld.bfd: final link failed: bad value
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:107: lib/librcsb-core-wrapper.la] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 INSTALL="install --strip-program=true" returned
exit code 2
make[1]: *** [debian/rules:17: override_dh_auto_build-nopy] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: librcsb-core-wrapper
Source-Version: 1.005-14
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
librcsb-core-wrapper, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated librcsb-core-wrapper
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 11 Sep 2026 10:39:11 +0200
Source: librcsb-core-wrapper
Architecture: source
Version: 1.005-14
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1046372 1105713 1146268
Changes:
librcsb-core-wrapper (1.005-14) unstable; urgency=medium
.
* d/watch: version=5
* Standards-Version: 4.7.4 (routine-update)
* Reflow Uploaders field (cme)
* Remove Priority field (cme)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* Reformat the Last-Update date as ISO YYYY-MM-DD.
* Prevent libtool from adding -nostdlib
Closes: #1146268)
* Remove trailing whitespace in debian/changelog (routine-update)
* Make sure necessary files are build even with make --shuffle=reverse
Closes: #1105713
* Really fix clean target
Closes: #1046372
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