Your message dated Mon, 28 Sep 2026 02:34:01 +0000
with message-id <[email protected]>
and subject line Bug#1148204: fixed in r-bioc-alabaster.base 1.12.1+dfsg-2
has caused the Debian Bug report #1148204,
regarding r-bioc-alabaster.base: FTBFS: collect2: error: ld returned 1 exit
status
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1148204: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1148204
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:r-bioc-alabaster.base
Version: 1.12.1+dfsg-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202609/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-bioc-alabaster.base, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
x86_64-linux-gnu-g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG
-I../inst/include -I'/usr/lib/R/site-library/Rcpp/include'
-I'/usr/lib/R/site-library/assorthead/include'
-I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.6.1=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 -c vls.cpp -o vls.o
x86_64-linux-gnu-g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o
alabaster.base.so RcppExports.o check_csv.o check_list.o
choose_numeric_missing_placeholder.o is_rfc3339.o load_csv.o load_list.o
validate.o vls.o /usr/lib/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a
/usr/lib/R/site-library/Rhdf5lib/lib/libhdf5.a
-L/usr/lib/R/site-library/Rhdf5lib/lib -lsz -lm -ldl -lcurl -lssl -lcrypto -lz
-L/usr/lib/R/lib -lR
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcurl: No such file or directory
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lssl: No such file or directory
/usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lcrypto: No such file or
directory
collect2: error: ld returned 1 exit status
make[1]: *** [/usr/share/R/share/make/shlib.mk:10: alabaster.base.so] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
ERROR: compilation failed for package ‘alabaster.base’
* removing
‘/<<PKGBUILDDIR>>/debian/r-bioc-alabaster.base/usr/lib/R/site-library/alabaster.base’
dh_auto_install: error: R CMD INSTALL -l
/<<BUILDDIR>>/r-bioc-alabaster.base-1.12.1\+dfsg/debian/r-bioc-alabaster.base/usr/lib/R/site-library
--clean . --built-timestamp="'Wed, 12 Aug 2026 11:03:42 +0900'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: r-bioc-alabaster.base
Source-Version: 1.12.1+dfsg-2
Done: Charles Plessy <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-alabaster.base, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated r-bioc-alabaster.base
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 28 Sep 2026 10:59:33 +0900
Source: r-bioc-alabaster.base
Architecture: source
Version: 1.12.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Charles Plessy <[email protected]>
Closes: 1148204
Changes:
r-bioc-alabaster.base (1.12.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Packaging update (routine-update)
* Build-depend on libcurl4-openssl-dev. Closes: #1148204
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