Package: src:python-prodigy Version: 2.4.0-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202610/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-prodigy, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_prodigy.py:9: in <module> from Bio.PDB.Model import Model /usr/lib/python3/dist-packages/Bio/PDB/__init__.py:30: in <module> raise MissingPythonDependencyError( E Bio.MissingPythonDependencyError: Please install NumPy if you want to use Bio.PDB. See http://www.numpy.org/ =========================== short test summary info ============================ ERROR tests/test_parsers.py ERROR tests/test_prodigy.py !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! ============================== 2 errors in 0.10s =============================== E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.15_prodigy/build; python3.15 -m pytest tests I: pybuild base:383: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prodigy/build; python3.14 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.14.8, pytest-9.1.1, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>> configfile: pyproject.toml collected 19 items tests/test_parsers.py ...... [ 31%] tests/test_prodigy.py ........... [ 89%] tests/test_utils.py .. [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py: 3 warnings .pybuild/cpython3_3.14_prodigy/build/tests/test_prodigy.py: 9 warnings /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:100: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 1314. warnings.warn( .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py: 3 warnings .pybuild/cpython3_3.14_prodigy/build/tests/test_prodigy.py: 9 warnings /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:100: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 1366. warnings.warn( .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_validate_structure_cif .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_parse_structure_cif .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_parse_structure_cif /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:100: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 924. warnings.warn( .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_validate_structure_cif .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_parse_structure_cif .pybuild/cpython3_3.14_prodigy/build/tests/test_parsers.py::test_parse_structure_cif /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:100: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 976. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 19 passed, 30 warnings in 12.86s ======================= dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.15 3.14" --parallel=2 returned exit code 13 make: *** [debian/rules:8: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
