Package: wnpp Severity: wishlist Owner: Laszlo Kajan <lka...@debian.org>
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 * Package name : libfreecontact-perl Version : 0.08 Upstream Author : Laszlo Kajan <lka...@rostlab.org> * URL : http://rostlab.org/ * License : GPL-1+ or Artistic Programming Lang: C, Perl Description : fast protein contact predictor - binding for Perl FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the Perl binding. -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iQIcBAEBAgAGBQJSOwPeAAoJEJvS1kCaDFL6OBwP/2g0nJQoCrxgbJT4M4+MdDYT puMZ0X0VAJqTipGWNawb1Xd10QFmqOSg1K8Rkou+CpO1zqssvreyhkd+53SvfL/d t6/AugvGYK222KeaOI0NA57ihHIkmJhxSvTgCSY3cKAgqks3JKZoOcxK8mi2xwlN Y2dnokBLRXLWRYvLkjyq9Ct+oFuzOIl/Mto8EviyRRkcBEYpOBfogc3mM0DlejFW wZt2rmi/qoOwOc+DIc9YisZocKx4BGNjLLq55cMbGQUF2Nm6G7rgvCezIIzwJ82r lU5tOL7Zxs5psrHEne/ocMr22jLmjrbV7yCByvmQAjUWa67rtpffnVulDrP1t6rl Oy9/vpTRJ9vPrqoV2a0F7JgBAfkMIZf1bBuuJcffXhNMvOcy80mg4CLq30nA7kmW LBaKInSxhoJd03aqj2XSRCI6wJNb2UHy1QrKapug3nt3B/pp5GcsuF4lRnEMf5Mp 2TNg1bnj95RRkUIouJrQ/PDYq0tWLpXsGB9cZFvbVEiocILpAC9T3SkpAxALm4DA pb+J8tb3V/K2CYl5trsLJOuts6A9Q40RqTZplOk3vWtgrtLsKb+IBvY5M1JzqcL6 QJfn3dc1tZPGUi60bKmQLZ+UEmrJ8ts07+iXwNxqTx1ggvy1E4g+Hqpd/oKb1EJh J02XqyW8iKuAbZDSomb+ =8w/X -----END PGP SIGNATURE----- -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130919140216.32507.83518.reportbug@debian-unstable.rostclust
