Package: gcc-6
Version: 6.2.0-4
Severity: important

Dear Maintainer,

Building GROMACS branch release-2016 from source with gcc 6.2.0-4 and running
tests results in:

Test project /home/vedranm/workspace/CompChem/gromacs/build-gcc
      Start  1: TestUtilsUnitTests
 1/20 Test  #1: TestUtilsUnitTests ...............   Passed    0.29 sec
      Start  2: GmxlibTests
 2/20 Test  #2: GmxlibTests ......................   Passed    0.06 sec
      Start  3: MdlibUnitTest
 3/20 Test  #3: MdlibUnitTest ....................   Passed    0.04 sec
      Start  4: CommandLineUnitTests
 4/20 Test  #4: CommandLineUnitTests .............***Exception: SegFault  0.07 
sec
[==========] Running 46 tests from 6 test cases.
[----------] Global test environment set-up.
[----------] 3 tests from CommandLineHelpModuleTest
[ RUN      ] CommandLineHelpModuleTest.PrintsGeneralHelp
[       OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (25 ms)
[ RUN      ] CommandLineHelpModuleTest.PrintsHelpOnTopic

      Start  5: FFTUnitTests
 5/20 Test  #5: FFTUnitTests .....................   Passed    0.94 sec
      Start  6: MathUnitTests
 6/20 Test  #6: MathUnitTests ....................   Passed    0.05 sec
      Start  7: RandomUnitTests
 7/20 Test  #7: RandomUnitTests ..................   Passed    0.06 sec
      Start  8: OnlineHelpUnitTests
 8/20 Test  #8: OnlineHelpUnitTests ..............***Exception: SegFault  0.07 
sec
[==========] Running 22 tests from 4 test cases.
[----------] Global test environment set-up.
[----------] 6 tests from TextTableFormatterTest
[ RUN      ] TextTableFormatterTest.HandlesBasicCase
[       OK ] TextTableFormatterTest.HandlesBasicCase (6 ms)
[ RUN      ] TextTableFormatterTest.HandlesEmptyColumnTitles
[       OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms)
[ RUN      ] TextTableFormatterTest.HandlesIndentation
[       OK ] TextTableFormatterTest.HandlesIndentation (0 ms)
[ RUN      ] TextTableFormatterTest.HandlesOverflowingLines
[       OK ] TextTableFormatterTest.HandlesOverflowingLines (4 ms)
[ RUN      ] TextTableFormatterTest.HandlesLastColumnFolding
[       OK ] TextTableFormatterTest.HandlesLastColumnFolding (1 ms)
[ RUN      ] TextTableFormatterTest.HandlesEmptyColumns
[       OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms)
[----------] 6 tests from TextTableFormatterTest (12 ms total)

[----------] 3 tests from HelpManagerTest
[ RUN      ] HelpManagerTest.HandlesRootTopic

      Start  9: OptionsUnitTests
 9/20 Test  #9: OptionsUnitTests .................***Exception: SegFault  0.03 
sec
[==========] Running 74 tests from 10 test cases.
[----------] Global test environment set-up.
[----------] 5 tests from AbstractOptionStorageTest
[ RUN      ] AbstractOptionStorageTest.HandlesSetInFinish

      Start 10: UtilityUnitTests
10/20 Test #10: UtilityUnitTests .................   Passed    0.14 sec
      Start 11: FileIOTests
11/20 Test #11: FileIOTests ......................   Passed    0.07 sec
      Start 12: SimdUnitTests
12/20 Test #12: SimdUnitTests ....................   Passed    0.18 sec
      Start 13: LegacyToolsTests
13/20 Test #13: LegacyToolsTests .................   Passed    0.47 sec
      Start 14: GmxPreprocessTests
14/20 Test #14: GmxPreprocessTests ...............   Passed    0.29 sec
      Start 15: CorrelationsTest
15/20 Test #15: CorrelationsTest .................   Passed    0.79 sec
      Start 16: AnalysisDataUnitTests
16/20 Test #16: AnalysisDataUnitTests ............***Exception: SegFault  0.06 
sec
[==========] Running 69 tests from 14 test cases.
[----------] Global test environment set-up.
[----------] 3 tests from AnalysisDataInitializationTest
[ RUN      ] AnalysisDataInitializationTest.BasicInitialization
[       OK ] AnalysisDataInitializationTest.BasicInitialization (1 ms)
[ RUN      ] AnalysisDataInitializationTest.ChecksMultiColumnModules
[       OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (17 ms)
[ RUN      ] AnalysisDataInitializationTest.ChecksMultipointModules
[       OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms)
[----------] 3 tests from AnalysisDataInitializationTest (18 ms total)

[----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = 
(anonymous namespace)::SimpleInputData
[ RUN      ] AnalysisDataCommonTest/0.CallsModuleCorrectly

      Start 17: SelectionUnitTests
17/20 Test #17: SelectionUnitTests ...............   Passed    0.72 sec
      Start 18: TrajectoryAnalysisUnitTests
18/20 Test #18: TrajectoryAnalysisUnitTests ......***Exception: SegFault  0.06 
sec
[==========] Running 48 tests from 8 test cases.
[----------] Global test environment set-up.
[----------] 11 tests from AngleModuleTest
[ RUN      ] AngleModuleTest.ComputesSimpleAngles

WARNING: If there are molecules in the input trajectory file
         that are broken across periodic boundaries, they
         cannot be made whole (or treated as whole) without
         you providing a run input file.


      Start 19: MdrunTests
19/20 Test #19: MdrunTests .......................   Passed   11.17 sec
      Start 20: MdrunMpiTests
20/20 Test #20: MdrunMpiTests ....................   Passed    0.63 sec

75% tests passed, 5 tests failed out of 20

Label Time Summary:
GTest                 =   3.91 sec (17 tests)
IntegrationTest       =  11.64 sec (2 tests)
MpiIntegrationTest    =   0.63 sec (1 test)
UnitTest              =   3.91 sec (17 tests)

Total Test time (real) =  16.61 sec

The following tests FAILED:
          4 - CommandLineUnitTests (SEGFAULT)
          8 - OnlineHelpUnitTests (SEGFAULT)
          9 - OptionsUnitTests (SEGFAULT)
         16 - AnalysisDataUnitTests (SEGFAULT)
         18 - TrajectoryAnalysisUnitTests (SEGFAULT)
Errors while running CTest
CMakeFiles/run-ctest.dir/build.make:57: recipe for target 
'CMakeFiles/run-ctest' failed
make[3]: *** [CMakeFiles/run-ctest] Error 8
CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/run-ctest.dir/all' failed
make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2
CMakeFiles/Makefile2:171: recipe for target 'CMakeFiles/check.dir/rule' failed
make[1]: *** [CMakeFiles/check.dir/rule] Error 2
Makefile:234: recipe for target 'check' failed
make: *** [check] Error 2

gcc 5.4.1-2 and Fedora's gcc 6.2.1-2 work fine.

-- System Information:
Debian Release: stretch/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armhf

Kernel: Linux 4.7.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages gcc-6 depends on:
ii  binutils      2.27-8
ii  cpp-6         6.2.0-4
ii  gcc-6-base    6.2.0-4
ii  libc6         2.24-3
ii  libcc1-0      6.2.0-4
ii  libgcc-6-dev  6.2.0-4
ii  libgcc1       1:6.2.0-4
ii  libgmp10      2:6.1.1+dfsg-1
ii  libisl15      0.17.1-1
ii  libmpc3       1.0.3-1
ii  libmpfr4      3.1.4-2
ii  libstdc++6    6.2.0-4
ii  zlib1g        1:1.2.8.dfsg-2+b1

Versions of packages gcc-6 recommends:
ii  libc6-dev  2.24-3

Versions of packages gcc-6 suggests:
pn  gcc-6-doc         <none>
pn  gcc-6-locales     <none>
ii  gcc-6-multilib    6.2.0-4
pn  libasan3-dbg      <none>
pn  libatomic1-dbg    <none>
pn  libcilkrts5-dbg   <none>
pn  libgcc1-dbg       <none>
pn  libgomp1-dbg      <none>
pn  libitm1-dbg       <none>
pn  liblsan0-dbg      <none>
pn  libmpx2-dbg       <none>
pn  libquadmath0-dbg  <none>
pn  libtsan0-dbg      <none>
pn  libubsan0-dbg     <none>

-- no debconf information

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