Hi,
I keep on struggling with qualimap[1] but I can not come past this
error despite I think I followed all hints on Debian-Java list (may
be I missed something?):
...
Project ID: org.bioinfo.ngs:qualimap
POM Location: /build/qualimap-2.1.3+dfsg/pom.xml
Validation Messages:
[0] For dependency Dependency {groupId=net.sf.picard, artifactId=picard,
version=debian, type=jar}: only dependency with system scope can specify
systemPath.
[1] For dependency Dependency {groupId=net.sf.samtools,
artifactId=samtools, version=debian, type=jar}: only dependency with system
scope can specify systemPath.
Reason: Failed to validate POM for project org.bioinfo.ngs:qualimap at
/build/qualimap-2.1.3+dfsg/pom.xml
[INFO] ------------------------------------------------------------------------
[INFO] Trace
org.apache.maven.reactor.MavenExecutionException: Failed to validate POM for
project org.bioinfo.ngs:qualimap at /build/qualimap-2.1.3+dfsg/pom.xml
at org.apache.maven.DefaultMaven.getProjects(DefaultMaven.java:404)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:272)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
at
org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
at org.codehaus.classworlds.Launcher.main(Launcher.java:375)
Caused by: org.apache.maven.project.InvalidProjectModelException: Failed to
validate POM for project org.bioinfo.ngs:qualimap at
/build/qualimap-2.1.3+dfsg/pom.xml
at
org.apache.maven.project.DefaultMavenProjectBuilder.processProjectLogic(DefaultMavenProjectBuilder.java:1077)
at
org.apache.maven.project.DefaultMavenProjectBuilder.buildInternal(DefaultMavenProjectBuilder.java:880)
at
org.apache.maven.project.DefaultMavenProjectBuilder.buildFromSourceFileInternal(DefaultMavenProjectBuilder.java:508)
at
org.apache.maven.project.DefaultMavenProjectBuilder.build(DefaultMavenProjectBuilder.java:200)
at org.apache.maven.DefaultMaven.getProject(DefaultMaven.java:604)
at org.apache.maven.DefaultMaven.collectProjects(DefaultMaven.java:487)
at org.apache.maven.DefaultMaven.getProjects(DefaultMaven.java:391)
... 12 more
[INFO] ------------------------------------------------------------------------
[INFO] Total time: < 1 second
[INFO] Finished at: Wed Dec 02 12:10:24 UTC 2015
[INFO] Final Memory: 4M/117M
Any help would be really welcome
Andreas.
[1] git://git.debian.org/git/debian-med/qualimap.git
--
http://fam-tille.de
