Author: plessy Date: 2008-08-06 04:31:38 +0000 (Wed, 06 Aug 2008) New Revision: 2389
Added: trunk/packages/tacg/trunk/debian/compat Removed: trunk/packages/tacg/trunk/debian/patches/path-to-data.patch trunk/packages/tacg/trunk/debian/patches/series trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch Modified: trunk/packages/tacg/trunk/debian/changelog trunk/packages/tacg/trunk/debian/control trunk/packages/tacg/trunk/debian/rules Log: New upstream release, patches and autoconf gizmo hopefully not needed anymore. I am in contact with the upstream author, who did not yet update the SourceForge website. Modified: trunk/packages/tacg/trunk/debian/changelog =================================================================== --- trunk/packages/tacg/trunk/debian/changelog 2008-08-04 19:01:30 UTC (rev 2388) +++ trunk/packages/tacg/trunk/debian/changelog 2008-08-06 04:31:38 UTC (rev 2389) @@ -1,4 +1,4 @@ -tacg (4.1.0-1) UNRELEASED; urgency=low +tacg (4.3-1) UNRELEASED; urgency=low * Initial release (Closes: #461504) Added: trunk/packages/tacg/trunk/debian/compat =================================================================== --- trunk/packages/tacg/trunk/debian/compat (rev 0) +++ trunk/packages/tacg/trunk/debian/compat 2008-08-06 04:31:38 UTC (rev 2389) @@ -0,0 +1 @@ +7 Modified: trunk/packages/tacg/trunk/debian/control =================================================================== --- trunk/packages/tacg/trunk/debian/control 2008-08-04 19:01:30 UTC (rev 2388) +++ trunk/packages/tacg/trunk/debian/control 2008-08-06 04:31:38 UTC (rev 2389) @@ -4,8 +4,8 @@ Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> DM-Upload-Allowed: yes Uploaders: Charles Plessy <[EMAIL PROTECTED]> -Build-Depends: debhelper, quilt, cdbs, autotools-dev, automake1.10, autoconf -Standards-Version: 3.7.3 +Build-Depends: debhelper (>= 7), quilt, cdbs, autotools-dev +Standards-Version: 3.8.0 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/tacg/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/tacg/ Homepage: http://tacg.sourceforge.net/ Deleted: trunk/packages/tacg/trunk/debian/patches/path-to-data.patch =================================================================== Deleted: trunk/packages/tacg/trunk/debian/patches/series =================================================================== --- trunk/packages/tacg/trunk/debian/patches/series 2008-08-04 19:01:30 UTC (rev 2388) +++ trunk/packages/tacg/trunk/debian/patches/series 2008-08-06 04:31:38 UTC (rev 2389) @@ -1,2 +0,0 @@ -to-build-with-gcc4.patch -path-to-data.patch Deleted: trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch =================================================================== --- trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch 2008-08-04 19:01:30 UTC (rev 2388) +++ trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch 2008-08-06 04:31:38 UTC (rev 2389) @@ -1,72 +0,0 @@ ---- a/tacg.h -+++ b/tacg.h -@@ -168,23 +168,6 @@ - #define _XOPEN_SOURCE 500 - - --/* ------------------ Global declarations ------------------------ */ -- --extern struct RE_struct *RE; --extern struct ORF_struct *ORFs[6]; --extern struct Digest_Data *DD; --extern struct Prox_struct PP[10]; --extern struct PW_struct *PosWin; --extern struct Clone_struct Clone_S[MAX_NUM_CLONE_RANGES]; --extern struct Rule_struct *Rules; --extern struct flag_struct F; --extern struct SE_struct *SelEnz[]; --extern char *sequence; --extern long *Degen_Log; --extern char *optarg; --extern int optind, opterr, optopt; -- -- - /* --------------------- Struct Declarations -------------------------- */ - - -@@ -438,6 +421,23 @@ - }; - - -+/* ------------------ Global declarations ------------------------ */ -+ -+extern struct RE_struct *RE; -+extern struct ORF_struct *ORFs[6]; -+extern struct Digest_Data *DD; -+extern struct Prox_struct PP[10]; -+extern struct PW_struct *PosWin; -+extern struct Clone_struct Clone_S[MAX_NUM_CLONE_RANGES]; -+extern struct Rule_struct *Rules; -+extern struct flag_struct F; -+extern struct SE_struct *SelEnz[]; -+extern char *sequence; -+extern long *Degen_Log; -+extern char *optarg; -+extern int optind, opterr, optopt; -+ -+ - /*********************** Function Prototype Declarations ************************/ - - /* fill_out_sum duplicates the degeneracy the correct # of times in the array 'sum[]' for submission ---- a/SeqFuncs.c -+++ b/SeqFuncs.c -@@ -1153,7 +1153,7 @@ - should have been functionized long ago */ - - void LinearMap(long seq_len, int basesPerLine, int NumREs, char *sequence, int max_okline, -- char Codons[][][], int codon_Table, int *Protos) { -+ char Codons[8][64][7], int codon_Table, int *Protos) { - - /* Declarations */ - int i, d, k, mm=0, rc, n_letters=0, Xn=0, okline, HTML, spacer, spacermod, stanzaspace, ---- a/SetFlags.c -+++ b/SetFlags.c -@@ -826,7 +826,7 @@ - "\nThis is free software; see the source for copying conditions. There is NO" - "\nwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.\n", - TACG_VERSION); -- fprintf (stdout, " Executable built: %s \n on kernel: %s\n GCC version: %s\n", TACG_BUILD_DATE, TACG_BUILD_PLATFORM, TACG_GCC_VER); -+ /*fprintf (stdout, " Executable built: %s \n on kernel: %s\n GCC version: %s\n", TACG_BUILD_DATE, TACG_BUILD_PLATFORM, TACG_GCC_VER);*/ - exit(1); - break; - Modified: trunk/packages/tacg/trunk/debian/rules =================================================================== --- trunk/packages/tacg/trunk/debian/rules 2008-08-04 19:01:30 UTC (rev 2388) +++ trunk/packages/tacg/trunk/debian/rules 2008-08-06 04:31:38 UTC (rev 2389) @@ -1,9 +1,5 @@ #!/usr/bin/make -f -DEB_AUTO_UPDATE_AUTOMAKE=1.10 -DEB_AUTO_UPDATE_ACLOCAL=1.10 -DEB_AUTO_UPDATE_AUTOCONF=2.61 - include /usr/share/cdbs/1/rules/patchsys-quilt.mk include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/class/autotools.mk _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
