Author: tille
Date: 2008-09-11 12:17:16 +0000 (Thu, 11 Sep 2008)
New Revision: 2482
Added:
trunk/packages/agdbnet/trunk/debian/README.Debian
trunk/packages/agdbnet/trunk/debian/docs
trunk/packages/agdbnet/trunk/debian/examples
Modified:
trunk/packages/agdbnet/trunk/debian/control
trunk/packages/agdbnet/trunk/debian/dirs
trunk/packages/agdbnet/trunk/debian/install
trunk/packages/agdbnet/trunk/debian/patches/series
trunk/packages/agdbnet/trunk/debian/postinst
Log:
More patches to fit installation on Debian system
Added: trunk/packages/agdbnet/trunk/debian/README.Debian
===================================================================
--- trunk/packages/agdbnet/trunk/debian/README.Debian
(rev 0)
+++ trunk/packages/agdbnet/trunk/debian/README.Debian 2008-09-11 12:17:16 UTC
(rev 2482)
@@ -0,0 +1,8 @@
+agdbnet for Debian
+------------------
+
+This Debian package tries to prepare your server as good as possible
+enable you to do the final steps to run agdbnet. Here are the last
+steps from installation manual that have to be done.
+
+ -- Andreas Tille <[EMAIL PROTECTED]> Fri, 05 Sep 2008 11:07:50 +0200
Modified: trunk/packages/agdbnet/trunk/debian/control
===================================================================
--- trunk/packages/agdbnet/trunk/debian/control 2008-09-11 09:00:26 UTC (rev
2481)
+++ trunk/packages/agdbnet/trunk/debian/control 2008-09-11 12:17:16 UTC (rev
2482)
@@ -2,7 +2,7 @@
Section: science
Priority: optional
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
-DM-Upload-Allowed: Yes
+DM-Upload-Allowed: yes
Uploaders: Andreas Tille <[EMAIL PROTECTED]>
Build-Depends: debhelper (>= 7), quilt, cdbs
Standards-Version: 3.8.0
@@ -12,7 +12,8 @@
Package: agdbnet
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib, blast2
+Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib, blast2,
postgresql-8.3,
+ libcgi-pm-perl, libdbd-pg-perl, libxml-perl
Description: antigen sequence database software for web-based bacterial typing
AgdbNet facilitates simultaneous BLAST querying of multiple loci using
either nucleotide or peptide sequences. Databases are described by XML
Modified: trunk/packages/agdbnet/trunk/debian/dirs
===================================================================
--- trunk/packages/agdbnet/trunk/debian/dirs 2008-09-11 09:00:26 UTC (rev
2481)
+++ trunk/packages/agdbnet/trunk/debian/dirs 2008-09-11 12:17:16 UTC (rev
2482)
@@ -1 +1 @@
-/etc/agdbnet
+/etc
Added: trunk/packages/agdbnet/trunk/debian/docs
===================================================================
--- trunk/packages/agdbnet/trunk/debian/docs (rev 0)
+++ trunk/packages/agdbnet/trunk/debian/docs 2008-09-11 12:17:16 UTC (rev
2482)
@@ -0,0 +1 @@
+installation.html
Added: trunk/packages/agdbnet/trunk/debian/examples
===================================================================
--- trunk/packages/agdbnet/trunk/debian/examples
(rev 0)
+++ trunk/packages/agdbnet/trunk/debian/examples 2008-09-11 12:17:16 UTC
(rev 2482)
@@ -0,0 +1 @@
+examples/*
Modified: trunk/packages/agdbnet/trunk/debian/install
===================================================================
--- trunk/packages/agdbnet/trunk/debian/install 2008-09-11 09:00:26 UTC (rev
2481)
+++ trunk/packages/agdbnet/trunk/debian/install 2008-09-11 12:17:16 UTC (rev
2482)
@@ -1 +1 @@
-cgi-bin/agdbnet.pl usr/lib/cgi-bin
+cgi-bin usr/lib
Modified: trunk/packages/agdbnet/trunk/debian/patches/series
===================================================================
--- trunk/packages/agdbnet/trunk/debian/patches/series 2008-09-11 09:00:26 UTC
(rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/patches/series 2008-09-11 12:17:16 UTC
(rev 2482)
@@ -1 +1,3 @@
-10_conf_location.dpatch
+10_conf_location.patch
+10_bioperl.patch
+10_preconf.patch
Modified: trunk/packages/agdbnet/trunk/debian/postinst
===================================================================
--- trunk/packages/agdbnet/trunk/debian/postinst 2008-09-11 09:00:26 UTC
(rev 2481)
+++ trunk/packages/agdbnet/trunk/debian/postinst 2008-09-11 12:17:16 UTC
(rev 2482)
@@ -22,7 +22,8 @@
case "$1" in
configure)
[ -d ${TMPDIR} ] || mkdir -p ${TMPDIR}
- chmod +w www-data ${TMPDIR}
+ chgrp www-data ${TMPDIR}
+ chmod g+w ${TMPDIR}
;;
abort-upgrade|abort-remove|abort-deconfigure)
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