Author: sonne Date: 2008-10-01 07:44:19 +0000 (Wed, 01 Oct 2008) New Revision: 2564
Added: trunk/packages/seqan/ trunk/packages/seqan/branches/ trunk/packages/seqan/build-area/ trunk/packages/seqan/tags/ trunk/packages/seqan/trunk/ trunk/packages/seqan/trunk/debian/ trunk/packages/seqan/trunk/debian/changelog trunk/packages/seqan/trunk/debian/compat trunk/packages/seqan/trunk/debian/control trunk/packages/seqan/trunk/debian/copyright trunk/packages/seqan/trunk/debian/orig-tar.sh trunk/packages/seqan/trunk/debian/rules trunk/packages/seqan/trunk/debian/watch Log: import seqan Added: trunk/packages/seqan/trunk/debian/changelog =================================================================== --- trunk/packages/seqan/trunk/debian/changelog (rev 0) +++ trunk/packages/seqan/trunk/debian/changelog 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,5 @@ +seqan (1.1-1) unstable; urgency=low + + * Initial Release (Closes: #487361) + + -- Soeren Sonnenburg <[EMAIL PROTECTED]> Fri, 23 May 2008 16:09:47 +0200 Added: trunk/packages/seqan/trunk/debian/compat =================================================================== --- trunk/packages/seqan/trunk/debian/compat (rev 0) +++ trunk/packages/seqan/trunk/debian/compat 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1 @@ +5 Added: trunk/packages/seqan/trunk/debian/control =================================================================== --- trunk/packages/seqan/trunk/debian/control (rev 0) +++ trunk/packages/seqan/trunk/debian/control 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,23 @@ +Source: seqan +Section: science +Priority: extra +Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> +Uploaders: Soeren Sonnenburg <[EMAIL PROTECTED]> +Build-Depends: cdbs, debhelper (>= 5) +Standards-Version: 3.8.0 +Homepage: http://www.seqan.de/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seqan/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/seqan/trunk/ + +Package: seqan0-dev +Section: libdevel +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: A C++ template library for the analysis of sequences. + SeqAn is a C++ template library of efficient algorithms and data + structures for the analysis of sequences with the focus on + biological data. This library applies a unique generic design that + guarantees high performance, generality, extensibility, and + integration with other libraries. SeqAn is easy to use and + simplifies the development of new software tools with a minimal loss + of performance. Added: trunk/packages/seqan/trunk/debian/copyright =================================================================== --- trunk/packages/seqan/trunk/debian/copyright (rev 0) +++ trunk/packages/seqan/trunk/debian/copyright 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,35 @@ +This package was debianized by by Soeren Sonnenburg <[EMAIL PROTECTED]>. + +It was downloaded from http://www.seqan.de . + +The upstream authors are + +Andreas Döring <[EMAIL PROTECTED]> +David Weese <[EMAIL PROTECTED]> +Tobias Rausch <[EMAIL PROTECTED]> +Stephan Aiche <[EMAIL PROTECTED]> +Anne-Katrin Emde <[EMAIL PROTECTED]> +Carsten Kemena <[EMAIL PROTECTED]> +Konrad Ludwig Moritz Rudolph <[EMAIL PROTECTED]> + +The file index/index_sa_lss.h is Copyright 1999, N. Jesper Larsson <[EMAIL PROTECTED]> + + This software may be used freely for any purpose. However, when distributed, + the original source must be clearly stated, and, when the source code is + distributed, the copyright notice must be retained and any alterations in + the code must be clearly marked. No warranty is given regarding the quality + of this software.*/ + + +The files + chaining/skip_list_base.h + chaining/skip_base_element.h + chaining/skip_list_impl.h + chaining/skip_list_dynamic.h + chaining/skip_element.h + chaining/skip_list.h + chaining/skip_list_iterator.h + chaining/skip_pool_alloc.h +are Copyright 2006, Hendrik Woehrle + +All rights reserved. NON-FREE - ASK AUTHORS!!! Added: trunk/packages/seqan/trunk/debian/orig-tar.sh =================================================================== --- trunk/packages/seqan/trunk/debian/orig-tar.sh (rev 0) +++ trunk/packages/seqan/trunk/debian/orig-tar.sh 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,19 @@ +#!/bin/sh + +SEQANDIR=seqan-$2 +SEQANFILE=seqan-${2}.orig.tar.gz +# called by uscan with '--upstream-version' <version> <file> +mkdir $SEQANDIR +unzip $3 -d $SEQANDIR +tar czf $SEQANFILE $SEQANDIR +rm -rf $SEQANDIR +rm -f $3 + +# move to directory 'tarballs' +if [ -r .svn/deb-layout ]; then + . .svn/deb-layout + mv $SEQANFILE $origDir + echo "moved $SEQANFILE to $origDir" +fi + +exit 0 Property changes on: trunk/packages/seqan/trunk/debian/orig-tar.sh ___________________________________________________________________ Name: svn:executable + * Added: trunk/packages/seqan/trunk/debian/rules =================================================================== --- trunk/packages/seqan/trunk/debian/rules (rev 0) +++ trunk/packages/seqan/trunk/debian/rules 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,27 @@ +#!/usr/bin/make -f + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/autotools.mk +include /usr/share/cdbs/1/rules/patchsys-quilt.mk + +LDFLAGS += -lCoinUtils +DEB_CONFIGURE_EXTRA_FLAGS += --enable-static CPPFLAGS=-I/usr/include/coin + +build/libclp-doc:: debian/stamp-build-libclp-doc +debian/stamp-build-libclp-doc: + doxygen doxydoc/doxygen.conf + touch $@ + +install/libclp-doc:: debian/stamp-install-libclp-doc +debian/stamp-install-libclp-doc: + mkdir -p $(CURDIR)/debian/libclp-doc/usr/share/doc/libclp-doc/html + cd doxydoc/html && cp *.html *.png *.gif *.css $(CURDIR)/debian/libclp-doc/usr/share/doc/libclp-doc/html/ + touch $@ + +get-orig-source: + -uscan --rename --upstream-version 0 + @echo successfully retrieved upstream tarball + +clean:: + $(RM) -r debian/stamp-* + Property changes on: trunk/packages/seqan/trunk/debian/rules ___________________________________________________________________ Name: svn:executable + * Added: trunk/packages/seqan/trunk/debian/watch =================================================================== --- trunk/packages/seqan/trunk/debian/watch (rev 0) +++ trunk/packages/seqan/trunk/debian/watch 2008-10-01 07:44:19 UTC (rev 2564) @@ -0,0 +1,6 @@ +version=3 +http://www.seqan.de/downloads/library/index.php \ +http://www.seqan.de/downloads/library/seqan-release-([\d\.]+)/download.html \ + debian debian/orig-tar.sh + + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
