Author: plessy
Date: 2009-01-11 06:06:43 +0000 (Sun, 11 Jan 2009)
New Revision: 2956
Modified:
trunk/packages/emboss/trunk/debian/TODO
trunk/packages/emboss/trunk/debian/changelog
trunk/packages/emboss/trunk/debian/control
trunk/packages/emboss/trunk/debian/rules
Log:
Upload introducing a new binary package, jemboss.
Modified: trunk/packages/emboss/trunk/debian/TODO
===================================================================
--- trunk/packages/emboss/trunk/debian/TODO 2009-01-10 21:42:35 UTC (rev
2955)
+++ trunk/packages/emboss/trunk/debian/TODO 2009-01-11 06:06:43 UTC (rev
2956)
@@ -1 +1,2 @@
- Use libpcre from Debian (needs #387557).
+- Provide menu and desktop entries to jEMBOSS.
Modified: trunk/packages/emboss/trunk/debian/changelog
===================================================================
--- trunk/packages/emboss/trunk/debian/changelog 2009-01-10 21:42:35 UTC
(rev 2955)
+++ trunk/packages/emboss/trunk/debian/changelog 2009-01-11 06:06:43 UTC
(rev 2956)
@@ -1,12 +1,16 @@
-emboss (6.0.1-3) UNRELEASED; urgency=low
+emboss (6.0.1-3) experimental; urgency=low
- * jEMBOSS
* New upstream patch (patch-1-3).
- fixes segmentation fault in vectorscript when -auto is used with empty
vectorsfile.
- adds '.' trailer to the OS line in SwissProt output.
* debian/rules: corrected the section of the manual pages of the renamed
programs from 1 to 1e (Closes: #503733).
+ * Preliminary support for jEMBOSS:
+ - Build-Depend on openjdk-6-jdk (debian/control).
+ - New package "jemboss", depending on openjdk-6-jre (debian/control).
+ - The jemboss package contains everything installed by the command
+ `make -C jemboss install' (debian/rules).
-- Charles Plessy <[email protected]> Wed, 26 Nov 2008 08:57:20 +0900
Modified: trunk/packages/emboss/trunk/debian/control
===================================================================
--- trunk/packages/emboss/trunk/debian/control 2009-01-10 21:42:35 UTC (rev
2955)
+++ trunk/packages/emboss/trunk/debian/control 2009-01-11 06:06:43 UTC (rev
2956)
@@ -67,9 +67,10 @@
Package: jemboss
Section: science
Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre
-Description: jEMBOSS
- Preliminary description for jEMBOSS
+Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre, tcsh | csh |
c-shell
+Description: graphical user interface to EMBOSS
+ Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
+ Biology Open Software Suite. It is part of the EMBOSS distribution.
Package: libajax6
Section: libs
Modified: trunk/packages/emboss/trunk/debian/rules
===================================================================
--- trunk/packages/emboss/trunk/debian/rules 2009-01-10 21:42:35 UTC (rev
2955)
+++ trunk/packages/emboss/trunk/debian/rules 2009-01-11 06:06:43 UTC (rev
2956)
@@ -53,7 +53,7 @@
rm -rf config.status install-stamp
# Temporary fix that may become unecessary in the future.
- # rm -f test/gb/Makefile test/wormpep/Makefile
+ rm -f test/gb/Makefile test/wormpep/Makefile
-cp debian/testembossrcbackup test/.embossrc
@@ -106,7 +106,7 @@
$(MAKE) -C jemboss install DESTDIR=$(CURDIR)/debian/jemboss
# dangling LICEN[CS]E FILE
- #-rm -f $(CURDIR)/debian/emboss-java/usr/share/EMBOSS/jemboss/LICENSE
+ rm $(CURDIR)/debian/jemboss/usr/share/EMBOSS/jemboss/LICENSE
### Installation of the test suite
cp -a test $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/
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